diff --git a/requirements.txt b/requirements.txt index 43b22900421ab854506d2c49df013bce6ade3656..e0bce6dc8705876ba3c53b68fba7e4ba21a74597 100644 --- a/requirements.txt +++ b/requirements.txt @@ -2,139 +2,485 @@ about-time==4.2.1 absl-py==2.1.0 accelerate==0.26.1 aiohttp==3.9.1 +aioprometheus==23.12.0 aiosignal==1.3.1 +alabaster==0.7.13 alive-progress==3.1.5 ansicon==1.89.0 anyio==4.2.0 +apache-beam==2.54.0 +argon2-cffi==23.1.0 +argon2-cffi-bindings==21.2.0 +array-record==0.5.0 +arrow==1.3.0 +astroid==3.0.3 +asttokens==2.4.1 +astunparse==1.6.3 +async-lru==2.0.4 +atomicwrites==1.4.1 +attributedict==0.3.0 attrs==23.2.0 +audioread==3.0.1 +autoawq==0.1.8 +autopep8==2.0.4 +awscli==1.31.9 +Babel==2.14.0 +bcrypt==4.1.1 +beautifulsoup4==4.12.3 +binaryornot==0.4.4 bitsandbytes==0.40.2 +black==23.11.0 bleach==6.1.0 blessed==1.20.0 +blessings==1.7 blis==0.7.11 +bokeh==3.3.2 +boost-py==0.0.2 +botocore==1.33.9 +cached-property @ file:///home/conda/feedstock_root/build_artifacts/cached_property_1615209429212/work cachetools==5.3.2 catalogue==2.0.10 certifi==2023.11.17 +cffi==1.16.0 +cftime==1.6.3 +chardet==5.2.0 charset-normalizer==3.3.2 +chex==0.1.85 +# Editable Git install with no remote (chirp==0.1.0) +-e /gpfs7kw/linkhome/idris/softmgr/softmgr01/MS/perch click==8.1.7 +click-plugins==1.1.1 +cligj==0.7.2 cloudpathlib==0.16.0 +cloudpickle==2.2.1 +clu==0.0.9 +codecov==2.1.13 colorama==0.4.6 +coloredlogs==15.0.1 +colour-runner==0.1.1 +comm==0.2.1 commonmark==0.9.1 confection==0.1.4 +conllu==4.5.3 +contextlib2==21.6.0 contourpy==1.2.0 +cookiecutter==2.5.0 +coverage==7.4.0 +crcmod==1.7 +cryptography==41.0.7 cycler==0.12.1 cymem==2.0.8 Cython==3.0.8 +dask==2023.12.0 +dask-jobqueue==0.8.2 dataclasses-json==0.6.3 +DataProperty==1.0.1 datasets==2.16.1 +db-dtypes==1.2.0 +debugpy==1.8.1 decorator==5.1.1 +deepdiff==6.7.1 +defusedxml==0.7.1 +Deprecated==1.2.14 +diff-match-patch==20230430 dill==0.3.7 +distlib==0.3.8 +distributed==2023.12.0 distro==1.9.0 +dm-tree==0.1.8 +dnspython==2.6.1 +docopt==0.6.2 +docstring-parser==0.15 +docstring-to-markdown==0.13 +docutils==0.16 +einops==0.7.0 +entrypoints @ file:///home/conda/feedstock_root/build_artifacts/entrypoints_1643888246732/work et-xmlfile==1.1.0 +etils==1.7.0 +evaluate==0.4.1 +exceptiongroup @ file:///home/conda/feedstock_root/build_artifacts/exceptiongroup_1700579780973/work +execnet==2.0.2 +executing==2.0.1 faiss-cpu==1.7.4 +fastapi==0.109.0 +fastavro==1.9.4 +fasteners==0.19 +fastjsonschema==2.19.1 +fastkml==0.12 filelock==3.13.1 +fiona==1.9.5 +flake8==6.1.0 +flash-attn==2.4.3.post1 +flatbuffers==23.5.26 +flax==0.7.5 fonttools==4.47.2 +fqdn==1.5.1 frozenlist==1.4.1 fsspec==2023.10.0 +gast==0.5.4 +gcsfs==2024.2.0 +geopandas==0.14.1 getdaft==0.1.20 +google-api-core==2.17.1 +google-apitools==0.5.31 google-auth==2.27.0 +google-auth-httplib2==0.1.1 google-auth-oauthlib==1.2.0 +google-cloud-aiplatform==1.42.1 +google-cloud-bigquery==3.17.2 +google-cloud-bigquery-storage==2.24.0 +google-cloud-bigtable==2.23.0 +google-cloud-core==2.4.1 +google-cloud-datastore==2.19.0 +google-cloud-dlp==3.15.2 +google-cloud-language==2.13.2 +google-cloud-pubsub==2.19.6 +google-cloud-pubsublite==1.9.0 +google-cloud-recommendations-ai==0.10.9 +google-cloud-resource-manager==1.12.2 +google-cloud-spanner==3.42.0 +google-cloud-storage==2.14.0 +google-cloud-videointelligence==2.13.2 +google-cloud-vision==3.7.1 +google-crc32c==1.5.0 +google-pasta==0.2.0 +google-resumable-media==2.7.0 +googleapis-common-protos==1.62.0 +googledrivedownloader==0.4 gpustat==1.1.1 grapheme==0.6.0 +grpc-google-iam-v1==0.13.0 +grpc-interceptor==0.15.4 grpcio==1.60.0 +grpcio-status==1.62.0 +gudhi==3.8.0 h11==0.14.0 h5py==3.10.0 +hdfs==2.7.3 +hopcroftkarp==1.2.5 html5lib==1.1 httpcore==1.0.2 +httplib2==0.22.0 +httptools==0.6.1 httpx==0.26.0 huggingface-hub==0.20.3 +humanfriendly==10.0 idna==3.6 imagecodecs==2024.1.1 +imageio==2.34.0 +imagesize==1.4.1 +immutabledict==4.1.0 +importlib-metadata==7.0.1 +importlib-resources==6.1.1 +inflection==0.5.1 +iniconfig==2.0.0 +inspecta==0.1.3 +intervaltree==3.1.0 +ipykernel==6.29.2 +ipython==8.22.1 +ipython-genutils==0.2.0 +ipywidgets==8.1.2 +isodate==0.6.1 +isoduration==20.11.0 +isort==5.13.2 +jaraco.classes==3.3.0 +jax==0.4.24 +jaxlib==0.4.24 +jedi==0.19.1 +jeepney==0.8.0 +jellyfish==1.0.3 Jinja2==3.1.3 jinxed==1.2.1 +jmespath==1.0.1 joblib==1.3.2 +Js2Py==0.74 +json5==0.9.17 +jsonlines==4.0.0 +jsonpickle==3.0.3 +jsonpointer==2.4 jsonschema==4.6.2 +jsonschema-specifications==2023.12.1 +jupyter==1.0.0 +jupyter-console==6.6.3 +jupyter-contrib-core==0.4.0 +jupyter-events==0.9.0 +jupyter-lsp==2.2.2 +jupyter-nbextensions-configurator==0.6.1 +jupyter-tensorboard==0.2.0 +jupyter_client==8.6.0 +jupyter_core==5.7.1 +jupyter_server==2.12.5 +jupyter_server_terminals==0.5.2 +jupyterlab==4.1.2 +jupyterlab_pygments==0.3.0 +jupyterlab_server==2.25.3 +jupyterlab_widgets==3.0.10 kaggle==1.6.3 -kaleido==0.1.0.post1 +kaleido==0.1.0 +keras==2.15.0 +keyring==24.3.0 kiwisolver==1.4.5 langcodes==3.3.0 +lazy_loader==0.3 Levenshtein==0.24.0 +libclang==16.0.6 +librosa==0.10.1 +lief==0.13.2 lightning-utilities==0.10.1 +linkify-it-py==2.0.3 +llvmlite==0.40.1 +lm_eval==0.4.0 +locket==1.0.0 loguru==0.7.2 loralib==0.1.2 ludwig==0.9.3 lxml==5.1.0 Markdown==3.5.2 +markdown-it-py==3.0.0 MarkupSafe==2.1.4 marshmallow==3.20.2 marshmallow-dataclass==8.5.4 marshmallow-jsonschema==0.13.0 matplotlib==3.8.2 +matplotlib-inline==0.1.6 +mbstrdecoder==1.1.3 +mccabe==0.7.0 +mdit-py-plugins==0.4.1 +mdurl==0.1.2 +mercurial==6.6.1 +mistune==3.0.2 +ml-dtypes==0.2.0 +ml_collections==0.1.1 +more-itertools==10.1.0 mpmath==1.3.0 +msgpack==1.0.7 multidict==6.0.4 multiprocess==0.70.15 murmurhash==1.0.10 mypy-extensions==1.0.0 +nb-conda-kernels @ file:///home/conda/feedstock_root/build_artifacts/nb_conda_kernels_1667060616919/work +nbclassic @ file:///home/conda/feedstock_root/build_artifacts/nbclassic_1683202081046/work +nbclient==0.9.0 +nbconvert==7.16.1 +nbformat==5.9.2 +nest-asyncio==1.6.0 +netCDF4==1.6.5 networkx==3.2.1 +ninja==1.11.1.1 nltk==3.8.1 +notebook==7.1.0 +notebook_shim==0.2.4 +numba==0.57.1 +numexpr==2.8.8 numpy==1.26.3 +numpydoc==1.6.0 +nvidia-cublas-cu12==12.1.3.1 +nvidia-cuda-cupti-cu12==12.1.105 +nvidia-cuda-nvrtc-cu12==12.1.105 +nvidia-cuda-runtime-cu12==12.1.105 +nvidia-cudnn-cu12==8.9.2.26 +nvidia-cufft-cu12==11.0.2.54 +nvidia-curand-cu12==10.3.2.106 +nvidia-cusolver-cu12==11.4.5.107 +nvidia-cusparse-cu12==12.1.0.106 nvidia-ml-py==12.535.133 +nvidia-nccl-cu12==2.18.1 +nvidia-nvjitlink-cu12==12.3.101 +nvidia-nvtx-cu12==12.1.105 +oauth2client==4.1.3 oauthlib==3.2.2 +objsize==0.7.0 openai==1.10.0 openpyxl==3.1.2 +opt-einsum==3.3.0 +optax @ git+https://github.com/google-deepmind/optax.git@623609c7a77a19d48b021cbc300262308846317e +orbax-checkpoint==0.4.4 +ordered-set==4.1.0 +orjson==3.9.12 +overrides==7.7.0 packaging==23.2 pandas==2.1.4 +pandas-gbq==0.21.0 +pandocfilters==1.5.1 +paramiko==3.3.1 +parso==0.8.3 +partd==1.4.1 +pathspec==0.11.2 +pathvalidate==3.2.0 peft==0.7.1 +peppercorn==0.6 +persim==0.3.2 +pexpect==4.9.0 +pickleshare @ file:///home/conda/feedstock_root/build_artifacts/pickleshare_1602536217715/work pillow==10.2.0 +pkgutil_resolve_name @ file:///home/conda/feedstock_root/build_artifacts/pkgutil-resolve-name_1694617248815/work +platformdirs==4.2.0 plotly==5.18.0 +pluggy==1.4.0 +pooch==1.8.1 +portalocker==2.8.2 preshed==3.0.9 +prometheus_client==0.20.0 +promise==2.3 +prompt-toolkit==3.0.43 +proto-plus==1.23.0 protobuf==4.23.4 psutil==5.9.4 +ptyprocess==0.7.0 +pure-eval==0.2.2 py==1.11.0 py-cpuinfo==9.0.0 pyarrow==15.0.0 pyarrow-hotfix==0.6 pyasn1==0.5.1 pyasn1-modules==0.3.0 +pybind11==2.11.1 +pycodestyle==2.11.1 +pycparser==2.21 pydantic==1.10.14 +pydata-google-auth==1.8.2 +pydocstyle==6.3.0 +pydot==1.4.2 +pydub==0.25.1 +pyflakes==3.1.0 +pygeoif==0.7 Pygments==2.17.2 +pyjsparser==2.7.1 +pylint==3.0.3 +pylint-venv==3.0.3 +pyls-spyder==0.4.0 +pymongo==4.6.2 +PyNaCl==1.5.0 pyparsing==3.1.1 +pyproj==3.6.1 +pyproject-api==1.6.1 +PyQt5==5.15.10 +PyQt5-Qt5==5.15.2 +PyQt5-sip==12.13.0 +PyQtWebEngine==5.15.6 +PyQtWebEngine-Qt5==5.15.2 pyrsistent==0.20.0 +pytablewriter==1.2.0 +pytest==8.0.1 +pytest-shard==0.1.2 +pytest-xdist==3.5.0 python-dateutil==2.8.2 +python-dotenv==1.0.0 +python-json-logger==2.0.7 python-Levenshtein==0.24.0 +python-lsp-black==1.3.0 +python-lsp-jsonrpc==1.1.2 +python-lsp-server==1.9.0 python-slugify==8.0.2 +pytoolconfig==1.2.6 pytz==2023.3.post1 +pyxdg==0.28 pyxlsb==1.0.10 PyYAML==6.0 +pyzmq==25.1.2 +QDarkStyle==3.2.3 +qstylizer==0.2.2 +QtAwesome==1.2.3 +qtconsole==5.5.1 +QtPy==2.4.1 +quantile-python==1.1 rapidfuzz==3.6.1 +ratelimiter==1.2.0.post0 +ray==2.9.1 +rdflib==7.0.0 +referencing==0.33.0 regex==2023.12.25 requests==2.31.0 requests-oauthlib==1.3.1 +responses==0.18.0 retry==0.9.2 +rfc3339-validator==0.1.4 +rfc3986-validator==0.1.1 rich==12.4.4 +ripser==0.6.4 +rootpath==0.1.1 +rope==1.11.0 +rouge-score==0.1.2 +rpds-py==0.18.0 rsa==4.9 +Rtree==1.1.0 +s3transfer==0.8.2 +sacrebleu==2.4.0 sacremoses==0.1.1 safetensors==0.4.2 +scenic @ git+https://github.com/google-research/scenic.git@93e6c3ec8bf223d682c06f8a0eb091e1654228e5 +scikit-image==0.22.0 scikit-learn==1.4.0 scipy==1.12.0 +SecretStorage==3.3.3 +Send2Trash==1.8.2 sentence-transformers==2.2.2 sentencepiece==0.1.99 +shapely==2.0.3 +shtab==1.6.5 +SimpleITK==2.3.1 +sisl==0.14.3 six==1.16.0 +slurmtop==0.0.2 smart-open==6.4.0 sniffio==1.3.0 +snowballstemmer==2.2.0 +sortedcontainers==2.4.0 +soundfile==0.12.1 +soupsieve==2.5 +soxr==0.3.7 spacy==3.7.2 spacy-legacy==3.0.12 spacy-loggers==1.0.5 +SPARQLWrapper==2.0.0 +spatialite==0.0.3 +Sphinx==7.2.6 +sphinxcontrib-applehelp==1.0.7 +sphinxcontrib-devhelp==1.0.5 +sphinxcontrib-htmlhelp==2.0.4 +sphinxcontrib-jsmath==1.0.1 +sphinxcontrib-qthelp==1.0.6 +sphinxcontrib-serializinghtml==1.1.9 +spyder==5.5.0 +spyder-kernels==2.5.0 +sqlitedict==2.1.0 +sqlparse==0.4.4 srsly==2.4.8 +stack-data==0.6.3 +starlette==0.35.1 sympy==1.12 +tabledata==1.3.3 tabulate==0.9.0 +tblib==3.0.0 +tcolorpy==0.1.4 tenacity==8.2.3 tensorboard==2.15.1 tensorboard-data-server==0.7.2 +tensorflow==2.15.0 +tensorflow-addons==0.23.0 +tensorflow-datasets==4.9.4 +tensorflow-estimator==2.15.0 +tensorflow-hub==0.14.0 +tensorflow-io==0.36.0 +tensorflow-io-gcs-filesystem==0.36.0 +tensorflow-metadata==1.13.1 +tensorstore==0.1.45 +termcolor==2.4.0 +terminado==0.18.0 text-unidecode==1.3 +textdistance==4.6.0 +texttable==1.7.0 +textual==0.59.0 thinc==8.2.2 threadpoolctl==3.2.0 +three-merge==0.1.1 tifffile==2023.12.9 +tinycss2==1.2.1 tokenizers==0.15.1 +toml==0.10.2 +tomli==2.0.1 +tomlkit==0.12.3 +toolz==0.12.1 torch==2.1.2 torchaudio==2.1.2 torchdata==0.7.1 @@ -142,21 +488,58 @@ torchinfo==1.8.0 torchmetrics==1.3.0.post0 torchtext==0.16.2 torchvision==0.16.2 +tornado==6.4 +tox==4.12.1 tqdm==4.66.1 +tqdm-multiprocess==0.0.11 +traitlets==5.14.1 transformers==4.37.1 +triton==2.1.0 +trl==0.7.10 +typeguard==2.13.3 +typepy==1.3.2 typer==0.9.0 +types-python-dateutil==2.8.19.20240106 typing-inspect==0.9.0 +typing-utils @ file:///home/conda/feedstock_root/build_artifacts/typing_utils_1622899189314/work typing_extensions==4.9.0 +tyro==0.7.0 tzdata==2023.4 +tzlocal==5.2 +uc-micro-py==1.0.3 +ujson==5.8.0 +uri-template==1.3.0 urllib3==1.26.18 +uvicorn==0.27.0 +uvloop==0.19.0 +virtualenv==20.25.0 +vllm==0.2.7 wasabi==1.1.2 +watchdog==3.0.0 +watchfiles==0.21.0 wcwidth==0.2.13 weasel==0.3.4 +webcolors==1.13 webencodings==0.5.1 +websocket-client==1.7.0 +websockets==12.0 Werkzeug==3.0.1 +whatthepatch==1.0.5 +widgetsnbextension==4.0.10 win32-setctime==1.1.0 +wrapt==1.14.1 +wurlitzer==3.0.3 +xarray==2024.3.0 +xeus-python==0.15.11 +xeus-python-shell==0.5.0 +xformers==0.0.23.post1 xlrd==2.0.1 XlsxWriter==3.1.9 xlwt==1.3.0 xxhash==3.4.1 +xyzservices==2023.10.1 +yapf==0.40.2 yarl==1.9.4 +zict==3.0.0 +zipp==3.17.0 +zstandard==0.22.0