diff --git a/datasets/taxon.zip b/datasets/taxon.zip deleted file mode 100644 index a17e015e54bda3e398219352f3cfbcf6d491896a..0000000000000000000000000000000000000000 Binary files a/datasets/taxon.zip and /dev/null differ diff --git a/queries/taxon/genus/agrotaxon.sparql b/queries/taxon/genus/agrotaxon.sparql deleted file mode 100755 index 95f1f112c9c100594a85617c95919a9f2dae9e83..0000000000000000000000000000000000000000 --- a/queries/taxon/genus/agrotaxon.sparql +++ /dev/null @@ -1,6 +0,0 @@ -PREFIX agro: <http://ontology.irstea.fr/agronomictaxon/core#> - -select distinct ?s where { -?s a agro:GenusRank. -} - diff --git a/queries/taxon/genus/agrovoc.sparql b/queries/taxon/genus/agrovoc.sparql deleted file mode 100755 index 55fdad7b4d9c625683435a0485397288b4edf7e4..0000000000000000000000000000000000000000 --- a/queries/taxon/genus/agrovoc.sparql +++ /dev/null @@ -1,13 +0,0 @@ -PREFIX agro: <http://ontology.irstea.fr/agronomictaxon/core#> -PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> -PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> -PREFIX dbo: <http://dbpedia.org/ontology/> -PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> -PREFIX skos: <http://www.w3.org/2004/02/skos/core#> -PREFIX agronto: <http://aims.fao.org/aos/agrontology#> -PREFIX agrovoc: <http://aims.fao.org/aos/agrovoc/> -PREFIX skos-xl: <http://www.w3.org/2008/05/skos-xl#> - -select ?s where { -?s agronto:hasTaxonomicRank agrovoc:c_11125. -} diff --git a/queries/taxon/genus/dbpedia.sparql b/queries/taxon/genus/dbpedia.sparql deleted file mode 100755 index d6ca98bc79ab19f41978335af099a76e128e9e51..0000000000000000000000000000000000000000 --- a/queries/taxon/genus/dbpedia.sparql +++ /dev/null @@ -1,6 +0,0 @@ -PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> -PREFIX dbo: <http://dbpedia.org/ontology/> - -select distinct ?s where { -?x dbo:genus ?s. -} diff --git a/queries/taxon/genus/taxref.sparql b/queries/taxon/genus/taxref.sparql deleted file mode 100755 index a3d8fa694214ddd0255ef5df9e6abb3824e7fa04..0000000000000000000000000000000000000000 --- a/queries/taxon/genus/taxref.sparql +++ /dev/null @@ -1,17 +0,0 @@ -PREFIX agro: <http://ontology.irstea.fr/agronomictaxon/core#> -PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> -PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> -PREFIX dbo: <http://dbpedia.org/ontology/> -PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> -PREFIX skos: <http://www.w3.org/2004/02/skos/core#> -PREFIX agronto: <http://aims.fao.org/aos/agrontology#> -PREFIX agrovoc: <http://aims.fao.org/aos/agrovoc/> -PREFIX skosxl: <http://www.w3.org/2008/05/skos-xl#> -PREFIX txrfp: <http://taxref.mnhn.fr/lod/property/> -PREFIX txrfrk: <http://taxref.mnhn.fr/lod/taxrank/> -PREFIX dc: <http://rs.tdwg.org/dwc/terms/> - -select distinct ?s where { -?s txrfp:hasRank txrfrk:Genus. - -} diff --git a/queries/taxon/hyperrank/agrotaxon.sparql b/queries/taxon/hyperrank/agrotaxon.sparql deleted file mode 100755 index 92d99075009b76731a2fe4251b9ceb97d97a88da..0000000000000000000000000000000000000000 --- a/queries/taxon/hyperrank/agrotaxon.sparql +++ /dev/null @@ -1,6 +0,0 @@ -PREFIX agro: <http://ontology.irstea.fr/agronomictaxon/core#> - -select distinct ?s ?o where { -?s agro:hasHigherRank ?o. -} - diff --git a/queries/taxon/hyperrank/agrovoc.sparql b/queries/taxon/hyperrank/agrovoc.sparql deleted file mode 100644 index fd2993a67ffe7f8cbd27fb274fc14842db78ead6..0000000000000000000000000000000000000000 --- a/queries/taxon/hyperrank/agrovoc.sparql +++ /dev/null @@ -1,15 +0,0 @@ -PREFIX agro: <http://ontology.irstea.fr/agronomictaxon/core#> -PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> -PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> -PREFIX dbo: <http://dbpedia.org/ontology/> -PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> -PREFIX skos: <http://www.w3.org/2004/02/skos/core#> -PREFIX agronto: <http://aims.fao.org/aos/agrontology#> -PREFIX agrovoc: <http://aims.fao.org/aos/agrovoc/> -PREFIX skos-xl: <http://www.w3.org/2008/05/skos-xl#> - -select distinct ?s ?o where { -?s agronto:hasTaxonomicRank ?rank1. -?o agronto:hasTaxonomicRank ?rank2. -?s skos:broader ?o. -} diff --git a/queries/taxon/hyperrank/dbpedia.sparql b/queries/taxon/hyperrank/dbpedia.sparql deleted file mode 100755 index f7d0a8bfc94a5ac36252c80ec4afdf6cfe7eaaba..0000000000000000000000000000000000000000 --- a/queries/taxon/hyperrank/dbpedia.sparql +++ /dev/null @@ -1,15 +0,0 @@ -PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> -PREFIX dbo: <http://dbpedia.org/ontology/> - -select distinct ?s ?o where { -?s a dbo:Species. -?o a dbo:Species. -{?s dbo:genus ?o.} -UNION{?s dbo:kingdom ?o.} -UNION{?s dbo:species ?o.} -UNION{?s dbo:phylum ?o.} -UNION{?s dbo:classis ?o.} -UNION{?s dbo:order ?o.} -UNION{?s dbo:family ?o.} -} - diff --git a/queries/taxon/hyperrank/taxref.sparql b/queries/taxon/hyperrank/taxref.sparql deleted file mode 100755 index 7aa76535215ba9187c40847b2dca4010436ef862..0000000000000000000000000000000000000000 --- a/queries/taxon/hyperrank/taxref.sparql +++ /dev/null @@ -1,12 +0,0 @@ -PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> -PREFIX skos: <http://www.w3.org/2004/02/skos/core#> -PREFIX txrfp: <http://taxref.mnhn.fr/lod/property/> -PREFIX txrfrk: <http://taxref.mnhn.fr/lod/taxrank/> -PREFIX dc: <http://rs.tdwg.org/dwc/terms/> - -select distinct ?s ?o where { -?s txrfp:hasRank ?rank. -?o txrfp:hasRank ?rank. -?s skos:broader ?o. -} - diff --git a/queries/taxon/kingdomof/agrotaxon.sparql b/queries/taxon/kingdomof/agrotaxon.sparql deleted file mode 100755 index 682058a7d706b6cca5e48d263d8537a21fc51147..0000000000000000000000000000000000000000 --- a/queries/taxon/kingdomof/agrotaxon.sparql +++ /dev/null @@ -1,6 +0,0 @@ -PREFIX agro: <http://ontology.irstea.fr/agronomictaxon/core#> - -select distinct ?s ?o where { -?s agro:hasHigherRank+ ?o. ?o a agro:KingdomRank. -} - diff --git a/queries/taxon/kingdomof/agrovoc.sparql b/queries/taxon/kingdomof/agrovoc.sparql deleted file mode 100644 index 99aaa536efd3d8c0c008831ce3e393b65a2d8957..0000000000000000000000000000000000000000 --- a/queries/taxon/kingdomof/agrovoc.sparql +++ /dev/null @@ -1,13 +0,0 @@ -PREFIX agro: <http://ontology.irstea.fr/agronomictaxon/core#> -PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> -PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> -PREFIX dbo: <http://dbpedia.org/ontology/> -PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> -PREFIX skos: <http://www.w3.org/2004/02/skos/core#> -PREFIX agronto: <http://aims.fao.org/aos/agrontology#> -PREFIX agrovoc: <http://aims.fao.org/aos/agrovoc/> -PREFIX skos-xl: <http://www.w3.org/2008/05/skos-xl#> - -select distinct ?s ?o where { -?s skos:broader+ ?o. ?o agronto:hasTaxonomicRank agrovoc:c_330934. -} diff --git a/queries/taxon/kingdomof/dbpedia.sparql b/queries/taxon/kingdomof/dbpedia.sparql deleted file mode 100755 index 6abcffb76acbee57d8786eb211c9a8febd254a4b..0000000000000000000000000000000000000000 --- a/queries/taxon/kingdomof/dbpedia.sparql +++ /dev/null @@ -1,7 +0,0 @@ -PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> -PREFIX dbo: <http://dbpedia.org/ontology/> - -select distinct ?s ?o where { -?s dbo:kingdom ?o. -} - diff --git a/queries/taxon/kingdomof/taxref.sparql b/queries/taxon/kingdomof/taxref.sparql deleted file mode 100755 index f942d0b5d527e82beeaa4dedf37709a10fdb6c8f..0000000000000000000000000000000000000000 --- a/queries/taxon/kingdomof/taxref.sparql +++ /dev/null @@ -1,10 +0,0 @@ -PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> -PREFIX skos: <http://www.w3.org/2004/02/skos/core#> -PREFIX txrfp: <http://taxref.mnhn.fr/lod/property/> -PREFIX txrfrk: <http://taxref.mnhn.fr/lod/taxrank/> -PREFIX dc: <http://rs.tdwg.org/dwc/terms/> - -select distinct ?s ?o where { -?s skos:broader+ ?o. ?o txrfp:hasRank txrfrk:kingdom. -} - diff --git a/queries/taxon/rank/agrotaxon.sparql b/queries/taxon/rank/agrotaxon.sparql deleted file mode 100755 index 9442afc13f21654803e4eb37eb02adf24979d1cb..0000000000000000000000000000000000000000 --- a/queries/taxon/rank/agrotaxon.sparql +++ /dev/null @@ -1,7 +0,0 @@ -PREFIX agro: <http://ontology.irstea.fr/agronomictaxon/core#> -PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> - -select distinct ?s ?o where { -?s a ?o. ?o rdfs:subClassOf+ agro:Taxon. -} - diff --git a/queries/taxon/rank/agrovoc.sparql b/queries/taxon/rank/agrovoc.sparql deleted file mode 100644 index 683dcf1a0137ac395243fc8af2c3b427cebdac6d..0000000000000000000000000000000000000000 --- a/queries/taxon/rank/agrovoc.sparql +++ /dev/null @@ -1,13 +0,0 @@ -PREFIX agro: <http://ontology.irstea.fr/agronomictaxon/core#> -PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> -PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> -PREFIX dbo: <http://dbpedia.org/ontology/> -PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> -PREFIX skos: <http://www.w3.org/2004/02/skos/core#> -PREFIX agronto: <http://aims.fao.org/aos/agrontology#> -PREFIX agrovoc: <http://aims.fao.org/aos/agrovoc/> -PREFIX skos-xl: <http://www.w3.org/2008/05/skos-xl#> - -select distinct ?s ?o where { -?s agronto:hasTaxonomicRank ?o. -} diff --git a/queries/taxon/rank/dbpedia.sparql b/queries/taxon/rank/dbpedia.sparql deleted file mode 100755 index d3e06260baadb0690e18f72fe1df394880d5a9d5..0000000000000000000000000000000000000000 --- a/queries/taxon/rank/dbpedia.sparql +++ /dev/null @@ -1,16 +0,0 @@ -PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> -PREFIX dbo: <http://dbpedia.org/ontology/> - -select distinct ?s ?o where { -?s a dbo:Species. -bind( if (exists {[] dbo:genus ?s}, "genus", - if (exists {[] dbo:kingdom ?s}, "kingdom", - if (exists {[] dbo:species ?s}, "species", - if (exists {[] dbo:phylum ?s}, "phylum", - if (exists {[] dbo:classis ?s}, "classis", - if (exists {[] dbo:order ?s}, "order", - if (exists {[] dbo:family ?s}, "family", - if (exists {?s dbo:genus []}, "species", - "")))))))) as ?o ) -} - diff --git a/queries/taxon/rank/taxref.sparql b/queries/taxon/rank/taxref.sparql deleted file mode 100755 index 43a4c92b108dd2aba4babf4ec482f8d75bf1cdaf..0000000000000000000000000000000000000000 --- a/queries/taxon/rank/taxref.sparql +++ /dev/null @@ -1,11 +0,0 @@ -PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> -PREFIX skos: <http://www.w3.org/2004/02/skos/core#> -PREFIX txrfp: <http://taxref.mnhn.fr/lod/property/> -PREFIX txrfrk: <http://taxref.mnhn.fr/lod/taxrank/> -PREFIX dc: <http://rs.tdwg.org/dwc/terms/> - -select distinct ?s ?o where { -?s txrfp:hasRank ?o. - -} - diff --git a/queries/taxon/taxon/agrotaxon.sparql b/queries/taxon/taxon/agrotaxon.sparql deleted file mode 100755 index 07c88931110c39b4cb7bc33474878e3426901b57..0000000000000000000000000000000000000000 --- a/queries/taxon/taxon/agrotaxon.sparql +++ /dev/null @@ -1,6 +0,0 @@ -PREFIX agro: <http://ontology.irstea.fr/agronomictaxon/core#> - -select distinct ?s where { -?s a agro:Taxon. -} - diff --git a/queries/taxon/taxon/agrovoc.sparql b/queries/taxon/taxon/agrovoc.sparql deleted file mode 100755 index 694417c49ed6106bc8fd557d1f002ab31b933305..0000000000000000000000000000000000000000 --- a/queries/taxon/taxon/agrovoc.sparql +++ /dev/null @@ -1,14 +0,0 @@ -PREFIX agro: <http://ontology.irstea.fr/agronomictaxon/core#> -PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> -PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> -PREFIX dbo: <http://dbpedia.org/ontology/> -PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> -PREFIX skos: <http://www.w3.org/2004/02/skos/core#> -PREFIX agronto: <http://aims.fao.org/aos/agrontology#> -PREFIX agrovoc: <http://aims.fao.org/aos/agrovoc/> -PREFIX skos-xl: <http://www.w3.org/2008/05/skos-xl#> - -select distinct ?s where { -?s agronto:hasTaxonomicRank ?y. -?y skos:broader+ agrovoc:c_7624. -} diff --git a/queries/taxon/taxon/dbpedia.sparql b/queries/taxon/taxon/dbpedia.sparql deleted file mode 100755 index 8aa64e83e6cc83b305df08605b27c3b9bcb013f3..0000000000000000000000000000000000000000 --- a/queries/taxon/taxon/dbpedia.sparql +++ /dev/null @@ -1,7 +0,0 @@ -PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> -PREFIX dbo: <http://dbpedia.org/ontology/> - -select distinct ?s where { -?s a dbo:Species. -} - diff --git a/queries/taxon/taxon/taxref.sparql b/queries/taxon/taxon/taxref.sparql deleted file mode 100755 index e5a3aad3c7555f6508963b6cfe895df4c3eb60a9..0000000000000000000000000000000000000000 --- a/queries/taxon/taxon/taxref.sparql +++ /dev/null @@ -1,10 +0,0 @@ -PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> -PREFIX skos: <http://www.w3.org/2004/02/skos/core#> -PREFIX txrfp: <http://taxref.mnhn.fr/lod/property/> -PREFIX txrfrk: <http://taxref.mnhn.fr/lod/taxrank/> -PREFIX dc: <http://rs.tdwg.org/dwc/terms/> - -select distinct ?s where { -?s txrfp:hasRank ?rank. -?rank a txrfrk:TaxonomicRank. -} diff --git a/queries/taxon/vernacularname/agrotaxon.sparql b/queries/taxon/vernacularname/agrotaxon.sparql deleted file mode 100755 index af78defb0b738017c3357887ff38bfc0b4bdf3e7..0000000000000000000000000000000000000000 --- a/queries/taxon/vernacularname/agrotaxon.sparql +++ /dev/null @@ -1,7 +0,0 @@ -PREFIX agro: <http://ontology.irstea.fr/agronomictaxon/core#> - -select distinct ?s ?o where { -?s agro:prefVernacularName ?o. -filter(lang(?o)= "en") -} - diff --git a/queries/taxon/vernacularname/agrovoc.sparql b/queries/taxon/vernacularname/agrovoc.sparql deleted file mode 100644 index 212ee3746801cafc1290d2fa5c0cd1aaa5dc9fce..0000000000000000000000000000000000000000 --- a/queries/taxon/vernacularname/agrovoc.sparql +++ /dev/null @@ -1,17 +0,0 @@ -PREFIX agro: <http://ontology.irstea.fr/agronomictaxon/core#> -PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> -PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> -PREFIX dbo: <http://dbpedia.org/ontology/> -PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> -PREFIX skos: <http://www.w3.org/2004/02/skos/core#> -PREFIX agronto: <http://aims.fao.org/aos/agrontology#> -PREFIX agrovoc: <http://aims.fao.org/aos/agrovoc/> -PREFIX skosxl: <http://www.w3.org/2008/05/skos-xl#> - -select distinct ?s ?o where { -?s agronto:hasTaxonomicRank ?therank. -{?s skos:prefLabel ?o.} -UNION{ ?s skosxl:prefLabel ?z. -?z skosxl:literalForm ?o. } -filter(lang(?o)="en") -} diff --git a/queries/taxon/vernacularname/dbpedia.sparql b/queries/taxon/vernacularname/dbpedia.sparql deleted file mode 100755 index 845b572434b0a39e037f17e6f06f0605196d3fdb..0000000000000000000000000000000000000000 --- a/queries/taxon/vernacularname/dbpedia.sparql +++ /dev/null @@ -1,9 +0,0 @@ -PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> -PREFIX dbo: <http://dbpedia.org/ontology/> - -select distinct ?s ?o where { -?s a dbo:Species. -?s rdfs:label ?o. -filter(lang(?o)="en") -} - diff --git a/queries/taxon/vernacularname/taxref.sparql b/queries/taxon/vernacularname/taxref.sparql deleted file mode 100755 index 74da379e11a11c7ed217f0bbae3d155aa860ad46..0000000000000000000000000000000000000000 --- a/queries/taxon/vernacularname/taxref.sparql +++ /dev/null @@ -1,12 +0,0 @@ -PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> -PREFIX skos: <http://www.w3.org/2004/02/skos/core#> -PREFIX txrfp: <http://taxref.mnhn.fr/lod/property/> -PREFIX txrfrk: <http://taxref.mnhn.fr/lod/taxrank/> -PREFIX dc: <http://rs.tdwg.org/dwc/terms/> - -select distinct ?s ?o where { -?s txrfp:vernacularName ?o. -filter(lang(?o)="en") - -} -