From 3b51778029709b5336473a4a6a5b00e6cba90aa5 Mon Sep 17 00:00:00 2001
From: BrunoDatoMeneses <bruno.dato.meneses@gmail.com>
Date: Thu, 19 Sep 2019 09:47:16 +0200
Subject: [PATCH] DEL: to delete
---
.../src/agents/AmoebaAgentMultiUI.java | 111 +++
AMOEBAonAMAK/src/gui/ContextRendererFX.java | 11 +-
.../src/gui/ContextRendererFXMultiUI.java | 92 +++
AMOEBAonAMAK/src/gui/NoneRenderer.java | 2 +-
AMOEBAonAMAK/src/gui/RenderStrategy.java | 3 +-
.../src/gui/RenderStrategyMutlUI.java | 34 +
AMOEBAonAMAK/src/kernel/AMOEBA.java | 66 +-
AMOEBAonAMAK/src/kernel/AMOEBAMultiUI.java | 770 ++++++++++++++++++
8 files changed, 1043 insertions(+), 46 deletions(-)
create mode 100644 AMOEBAonAMAK/src/agents/AmoebaAgentMultiUI.java
create mode 100644 AMOEBAonAMAK/src/gui/ContextRendererFXMultiUI.java
create mode 100644 AMOEBAonAMAK/src/gui/RenderStrategyMutlUI.java
create mode 100644 AMOEBAonAMAK/src/kernel/AMOEBAMultiUI.java
diff --git a/AMOEBAonAMAK/src/agents/AmoebaAgentMultiUI.java b/AMOEBAonAMAK/src/agents/AmoebaAgentMultiUI.java
new file mode 100644
index 00000000..9c8516fc
--- /dev/null
+++ b/AMOEBAonAMAK/src/agents/AmoebaAgentMultiUI.java
@@ -0,0 +1,111 @@
+package agents;
+
+import agents.percept.Percept;
+import fr.irit.smac.amak.Agent;
+import fr.irit.smac.amak.tools.Loggable;
+import gui.RenderStrategy;
+import gui.RenderStrategyMutlUI;
+import kernel.AMOEBA;
+import kernel.World;
+
+/**
+ * The base class for all AMOEBA agents
+ */
+public abstract class AmoebaAgentMultiUI extends Agent<AMOEBA, World> implements Loggable {
+ // Attributes
+ protected String name;
+ private boolean dying;
+
+ protected RenderStrategyMutlUI renderStrategy;
+
+ /**
+ * Instantiate a new agent attached to an amoeba
+ * @param the amoeba
+ */
+ public AmoebaAgentMultiUI(AMOEBA amas, Object... params) {
+ super(amas, params);
+ this.dying = false;
+ }
+
+ @Override
+ protected void onReady() {
+ super.onReady();
+ logger().debug("CYCLE "+getAmas().getCycle(), "Agent %s ready.", toString());
+ }
+
+ @Override
+ protected void onDecide() {
+ }
+
+ @Override
+ protected void onRenderingInitialization() {
+ if(renderStrategy != null) {
+ renderStrategy.initialize(getAmas().getVUIMulti());
+
+ }
+ }
+
+ @Override
+ public void onUpdateRender() {
+ amas.getEnvironment().incrementNbActivatedAgent();
+ if(renderStrategy != null && !isDying()) {
+ if (amas.isRenderUpdate()) {
+ renderStrategy.render();
+ }
+ }
+ }
+
+ /**
+ * Set the name of the agent. Useful for visualization, and essential for {@link Percept}.
+ * @param name
+ */
+ public void setName(String name) {
+ this.name = name;
+ }
+
+ @Override
+ public void destroy() {
+ dying = true;
+ if(renderStrategy != null) {
+ renderStrategy.delete();
+ }
+ super.destroy();
+ logger().debug("CYCLE "+getAmas().getCycle(), "Agent %s destroyed.", toString());
+ }
+
+ /**
+ * Get the name of the agent. Useful for visualization, and essential for {@link Percept}.
+ * @param name
+ */
+ public String getName() {
+ return name;
+ }
+
+ /**
+ * Tell if the agent is dying. A dying agent no longer perform any useful action, but is not yet removed from its system.
+ * @return
+ */
+ public boolean isDying() {
+ return dying;
+ }
+
+ /**
+ * Set the render strategy of an agent.<br/>
+ * {@link RenderStrategy#delete()} the old one, and {@link RenderStrategy#initialize()} the new one.
+ * @param renderStrategy
+ * @see RenderStrategy
+ */
+ public void setRenderStrategy(RenderStrategyMutlUI renderStrategy) {
+ if(this.renderStrategy != null) this.renderStrategy.delete();
+ this.renderStrategy = renderStrategy;
+ if(this.renderStrategy != null) this.renderStrategy.initialize(getAmas().getVUIMulti());
+ }
+
+ /**
+ * Get the render strategy of an agent.
+ * @return
+ */
+ public RenderStrategyMutlUI getRenderStrategy() {
+ return renderStrategy;
+ }
+}
diff --git a/AMOEBAonAMAK/src/gui/ContextRendererFX.java b/AMOEBAonAMAK/src/gui/ContextRendererFX.java
index cd484386..6faa3717 100644
--- a/AMOEBAonAMAK/src/gui/ContextRendererFX.java
+++ b/AMOEBAonAMAK/src/gui/ContextRendererFX.java
@@ -2,7 +2,6 @@ package gui;
import agents.context.Context;
import agents.percept.Percept;
-import fr.irit.smac.amak.ui.VUIMulti;
import fr.irit.smac.amak.ui.drawables.DrawableRectangle;
import gui.utils.ContextColor;
import javafx.scene.paint.Color;
@@ -65,8 +64,8 @@ public class ContextRendererFX extends RenderStrategy {
* window.
*/
@Override
- public void initialize(VUIMulti vui) {
- getDrawable(vui).setName(context.toString()); // create the drawable if it does not exist
+ public void initialize() {
+ getDrawable().setName(context.toString()); // create the drawable if it does not exist
}
@@ -82,11 +81,11 @@ public class ContextRendererFX extends RenderStrategy {
*
* @return
*/
- public DrawableRectangle getDrawable(VUIMulti vui) {
+ public DrawableRectangle getDrawable() {
if (!context.isDying() && drawable == null) {
drawable = new DrawableContext(0, 0, 0, 0, context);
- vui.add(drawable);
+ AmoebaWindow.instance().mainVUI.add(drawable);
}
return drawable;
}
-}
+}
\ No newline at end of file
diff --git a/AMOEBAonAMAK/src/gui/ContextRendererFXMultiUI.java b/AMOEBAonAMAK/src/gui/ContextRendererFXMultiUI.java
new file mode 100644
index 00000000..29cbd994
--- /dev/null
+++ b/AMOEBAonAMAK/src/gui/ContextRendererFXMultiUI.java
@@ -0,0 +1,92 @@
+package gui;
+
+import agents.context.Context;
+import agents.percept.Percept;
+import fr.irit.smac.amak.ui.VUIMulti;
+import fr.irit.smac.amak.ui.drawables.DrawableRectangle;
+import gui.utils.ContextColor;
+import javafx.scene.paint.Color;
+
+/**
+ * A render strategy for contexts using AMAKFX tools.<br/>
+ * A Context is represented by a {@link DrawableRectangle} drawn onto {@link AmoebaWindow#mainVUI}.
+ *
+ * @author Hugo
+ *
+ */
+public class ContextRendererFXMultiUI extends RenderStrategyMutlUI {
+
+ private Context context;
+
+ private DrawableContext drawable;
+
+ public ContextRendererFXMultiUI(Object o) {
+ this((Context) o);
+ }
+
+ /**
+ * @param context the context to be rendered.
+ */
+ public ContextRendererFXMultiUI(Context context) {
+ super(context);
+ this.context = context;
+ }
+
+ @Override
+ public void render() {
+ updatePosition();
+ updateColor();
+ drawable.setName(context.toString());
+ drawable.setInfo(context.toStringFull());
+ }
+
+ private void updateColor() {
+ Double[] c = ContextColor.colorFromCoefs(context.getFunction().getCoef());
+ drawable.setColor(new Color(c[0], c[1], c[2], 90d / 255d));
+ }
+
+ public String getColorForUnity() {
+ Double[] c = ContextColor.colorFromCoefs(context.getFunction().getCoef());
+ return c[0].intValue() + "," + c[1].intValue() + "," + c[2].intValue() + ",100";
+ }
+
+ private void updatePosition() {
+ Percept p1 = context.getAmas().getDimensionSelector().d1();
+ Percept p2 = context.getAmas().getDimensionSelector().d2();
+ double x = context.getRanges().get(p1).getStart();
+ double y = context.getRanges().get(p2).getStart();
+ drawable.setWidth(context.getRanges().get(p1).getLenght());
+ drawable.setHeight(context.getRanges().get(p2).getLenght());
+ drawable.move(x, y);
+ }
+
+ /**
+ * Initialize the drawable.
+ * window.
+ */
+ @Override
+ public void initialize(VUIMulti vui) {
+ getDrawable(vui).setName(context.toString()); // create the drawable if it does not exist
+
+ }
+
+ @Override
+ public void delete() {
+ if (drawable != null)
+ drawable.delete();
+ }
+
+
+ /**
+ * Return the visualization for the VUI, may create and add it to the VUI.
+ *
+ * @return
+ */
+ public DrawableRectangle getDrawable(VUIMulti vui) {
+ if (!context.isDying() && drawable == null) {
+ drawable = new DrawableContext(0, 0, 0, 0, context);
+ vui.add(drawable);
+ }
+ return drawable;
+ }
+}
diff --git a/AMOEBAonAMAK/src/gui/NoneRenderer.java b/AMOEBAonAMAK/src/gui/NoneRenderer.java
index 438a9809..e78259dd 100644
--- a/AMOEBAonAMAK/src/gui/NoneRenderer.java
+++ b/AMOEBAonAMAK/src/gui/NoneRenderer.java
@@ -14,7 +14,7 @@ public class NoneRenderer extends RenderStrategy {
}
@Override
- public void initialize(VUIMulti vui) {
+ public void initialize() {
}
@Override
diff --git a/AMOEBAonAMAK/src/gui/RenderStrategy.java b/AMOEBAonAMAK/src/gui/RenderStrategy.java
index 7552c951..8cb1dd9d 100644
--- a/AMOEBAonAMAK/src/gui/RenderStrategy.java
+++ b/AMOEBAonAMAK/src/gui/RenderStrategy.java
@@ -18,8 +18,7 @@ public abstract class RenderStrategy {
/**
* Called when the rendered object need to be initialized
*/
- //abstract public void initialize();
- abstract public void initialize(VUIMulti vui);
+ abstract public void initialize();
/**
* Called to render the object.
diff --git a/AMOEBAonAMAK/src/gui/RenderStrategyMutlUI.java b/AMOEBAonAMAK/src/gui/RenderStrategyMutlUI.java
new file mode 100644
index 00000000..1d7bd9e3
--- /dev/null
+++ b/AMOEBAonAMAK/src/gui/RenderStrategyMutlUI.java
@@ -0,0 +1,34 @@
+package gui;
+
+import fr.irit.smac.amak.ui.VUIMulti;
+
+/**
+ * Strategy on how to render an object.
+ * See {@link ContextRendererFX} for example on how to extends this class.
+ * @author Hugo
+ */
+public abstract class RenderStrategyMutlUI {
+
+ /**
+ * @param o the object to be rendered
+ */
+ public RenderStrategyMutlUI(Object o) {
+ }
+
+ /**
+ * Called when the rendered object need to be initialized
+ */
+ //abstract public void initialize();
+ abstract public void initialize(VUIMulti vui);
+
+ /**
+ * Called to render the object.
+ */
+ abstract public void render();
+
+ /**
+ * Called when the render of the object is no longer needed.
+ */
+ abstract public void delete();
+
+}
diff --git a/AMOEBAonAMAK/src/kernel/AMOEBA.java b/AMOEBAonAMAK/src/kernel/AMOEBA.java
index bf1b2c62..70eb7ac7 100644
--- a/AMOEBAonAMAK/src/kernel/AMOEBA.java
+++ b/AMOEBAonAMAK/src/kernel/AMOEBA.java
@@ -23,8 +23,6 @@ import fr.irit.smac.amak.Scheduling;
import fr.irit.smac.amak.tools.Log;
import fr.irit.smac.amak.tools.RunLaterHelper;
import fr.irit.smac.amak.ui.AmakPlot;
-import fr.irit.smac.amak.ui.VUIMulti;
-import gui.AmoebaMultiUIWindow;
import gui.AmoebaWindow;
import gui.DimensionSelector;
import kernel.backup.IBackupSystem;
@@ -40,9 +38,6 @@ import utils.PrintOnce;
*/
public class AMOEBA extends Amas<World> implements IAMOEBA {
// -- Attributes
-
-
- public VUIMulti vuiMulti;
/**
* Utility to save, autosave, and load amoebas.
*/
@@ -53,8 +48,6 @@ public class AMOEBA extends Amas<World> implements IAMOEBA {
*/
public StudiedSystem studiedSystem;
- public AmoebaMultiUIWindow multiUIWindow;
-
private Head head;
private TypeLocalModel localModel = TypeLocalModel.MILLER_REGRESSION;
private HashMap<String, Double> perceptions = new HashMap<String, Double>();
@@ -89,9 +82,8 @@ public class AMOEBA extends Amas<World> implements IAMOEBA {
* @param studiedSystem
* the studied system
*/
- public AMOEBA(AmoebaMultiUIWindow window, VUIMulti vui) {
- super(window, vui, new World(), Scheduling.HIDDEN);
- vuiMulti = vui;
+ public AMOEBA() {
+ super(new World(), Scheduling.HIDDEN);
}
/**
@@ -99,9 +91,8 @@ public class AMOEBA extends Amas<World> implements IAMOEBA {
*
* @param path path to the config file.
*/
- public AMOEBA(AmoebaMultiUIWindow window, VUIMulti vui, String path, StudiedSystem studiedSystem) {
- super(window, vui, new World(), Scheduling.HIDDEN);
- vuiMulti = vui;
+ public AMOEBA(String path, StudiedSystem studiedSystem) {
+ super(new World(), Scheduling.HIDDEN);
this.studiedSystem = studiedSystem;
setRenderUpdate(true);
saver = new SaveHelperImpl(this);
@@ -121,22 +112,23 @@ public class AMOEBA extends Amas<World> implements IAMOEBA {
@Override
protected void onRenderingInitialization() {
- ((AmoebaMultiUIWindow) amasMultiUIWindow).initialize(this);
+ AmoebaWindow.instance().initialize(this);
}
@Override
protected void onUpdateRender() {
// Update statistics
- if(amasMultiUIWindow!=null) {
-
- AmakPlot loopNCS = ((AmoebaMultiUIWindow)amasMultiUIWindow).getPlot("This loop NCS");
- AmakPlot allNCS = ((AmoebaMultiUIWindow)amasMultiUIWindow).getPlot("All time NCS");
- AmakPlot nbAgent = ((AmoebaMultiUIWindow)amasMultiUIWindow).getPlot("Number of agents");
- AmakPlot errors = ((AmoebaMultiUIWindow)amasMultiUIWindow).getPlot("Errors");
- AmakPlot distancesToModels = ((AmoebaMultiUIWindow)amasMultiUIWindow).getPlot("Distances to models");
- AmakPlot gloabalMappingCriticality = ((AmoebaMultiUIWindow)amasMultiUIWindow).getPlot("Global Mapping Criticality");
- AmakPlot timeExecution = ((AmoebaMultiUIWindow)amasMultiUIWindow).getPlot("Time Execution");
- AmakPlot criticalities = ((AmoebaMultiUIWindow)amasMultiUIWindow).getPlot("Criticalities");
+ if(AmoebaWindow.isInstance()) {
+ AmoebaWindow window = AmoebaWindow.instance();
+
+ AmakPlot loopNCS = window.getPlot("This loop NCS");
+ AmakPlot allNCS = window.getPlot("All time NCS");
+ AmakPlot nbAgent = window.getPlot("Number of agents");
+ AmakPlot errors = window.getPlot("Errors");
+ AmakPlot distancesToModels = window.getPlot("Distances to models");
+ AmakPlot gloabalMappingCriticality = window.getPlot("Global Mapping Criticality");
+ AmakPlot timeExecution = window.getPlot("Time Execution");
+ AmakPlot criticalities = window.getPlot("Criticalities");
boolean notify = isRenderUpdate();
@@ -182,7 +174,7 @@ public class AMOEBA extends Amas<World> implements IAMOEBA {
}
if (isRenderUpdate()) {
- ((AmoebaMultiUIWindow)amasMultiUIWindow).mainVUI.updateCanvas();
+ AmoebaWindow.instance().mainVUI.updateCanvas();
updateAgentsVisualisation();
RunLaterHelper.runLater(() -> {resetCycleWithoutRender();});
}
@@ -462,7 +454,7 @@ public class AMOEBA extends Amas<World> implements IAMOEBA {
*/
public void allowGraphicalScheduler(boolean allow) {
if (!Configuration.commandLineMode) {
- ((AmoebaMultiUIWindow)amasMultiUIWindow).schedulerToolbar.setDisable(!allow);
+ AmoebaWindow.instance().schedulerToolbar.setDisable(!allow);
}
}
@@ -484,7 +476,7 @@ public class AMOEBA extends Amas<World> implements IAMOEBA {
super.addPendingAgents();
nextCycleRunAllAgents();
if(!Configuration.commandLineMode) {
- ((AmoebaMultiUIWindow)amasMultiUIWindow).dimensionSelector.update(getPercepts());
+ AmoebaWindow.instance().dimensionSelector.update(getPercepts());
updateAgentsVisualisation();
}
}
@@ -512,7 +504,7 @@ public class AMOEBA extends Amas<World> implements IAMOEBA {
public void setRenderUpdate(boolean renderUpdate) {
if (!Configuration.commandLineMode) {
this.renderUpdate = renderUpdate;
- ((AmoebaMultiUIWindow)amasMultiUIWindow).toggleRender.setSelected(renderUpdate);
+ AmoebaWindow.instance().toggleRender.setSelected(renderUpdate);
if(renderUpdate == true)
nextCycleRunAllAgents();
}
@@ -603,13 +595,13 @@ public class AMOEBA extends Amas<World> implements IAMOEBA {
for(Agent<? extends Amas<World>, World> a : getAgents()) {
a.onUpdateRender();
}
- ((AmoebaMultiUIWindow)amasMultiUIWindow).point.move(((AmoebaMultiUIWindow)amasMultiUIWindow).dimensionSelector.d1().getValue(), ((AmoebaMultiUIWindow)amasMultiUIWindow).dimensionSelector.d2().getValue());
- ((AmoebaMultiUIWindow)amasMultiUIWindow).rectangle.setHeight(2*getEnvironment().getContextCreationNeighborhood(null, ((AmoebaMultiUIWindow)amasMultiUIWindow).dimensionSelector.d2()));
- ((AmoebaMultiUIWindow)amasMultiUIWindow).rectangle.setWidth(2*getEnvironment().getContextCreationNeighborhood(null, ((AmoebaMultiUIWindow)amasMultiUIWindow).dimensionSelector.d1()));
- ((AmoebaMultiUIWindow)amasMultiUIWindow).rectangle.move(((AmoebaMultiUIWindow)amasMultiUIWindow).dimensionSelector.d1().getValue() - getEnvironment().getContextCreationNeighborhood(null, ((AmoebaMultiUIWindow)amasMultiUIWindow).dimensionSelector.d1()), ((AmoebaMultiUIWindow)amasMultiUIWindow).dimensionSelector.d2().getValue() - getEnvironment().getContextCreationNeighborhood(null, ((AmoebaMultiUIWindow)amasMultiUIWindow).dimensionSelector.d2()));
- ((AmoebaMultiUIWindow)amasMultiUIWindow).mainVUI.updateCanvas();
- ((AmoebaMultiUIWindow)amasMultiUIWindow).point.toFront();
- ((AmoebaMultiUIWindow)amasMultiUIWindow).point.setInfo(getCursorInfo());
+ AmoebaWindow.instance().point.move(AmoebaWindow.instance().dimensionSelector.d1().getValue(), AmoebaWindow.instance().dimensionSelector.d2().getValue());
+ AmoebaWindow.instance().rectangle.setHeight(2*getEnvironment().getContextCreationNeighborhood(null, AmoebaWindow.instance().dimensionSelector.d2()));
+ AmoebaWindow.instance().rectangle.setWidth(2*getEnvironment().getContextCreationNeighborhood(null, AmoebaWindow.instance().dimensionSelector.d1()));
+ AmoebaWindow.instance().rectangle.move(AmoebaWindow.instance().dimensionSelector.d1().getValue() - getEnvironment().getContextCreationNeighborhood(null, AmoebaWindow.instance().dimensionSelector.d1()), AmoebaWindow.instance().dimensionSelector.d2().getValue() - getEnvironment().getContextCreationNeighborhood(null, AmoebaWindow.instance().dimensionSelector.d2()));
+ AmoebaWindow.instance().mainVUI.updateCanvas();
+ AmoebaWindow.instance().point.toFront();
+ AmoebaWindow.instance().point.setInfo(getCursorInfo());
}
/**
@@ -617,7 +609,7 @@ public class AMOEBA extends Amas<World> implements IAMOEBA {
* @return
*/
public DimensionSelector getDimensionSelector() {
- return ((AmoebaMultiUIWindow)amasMultiUIWindow).dimensionSelector;
+ return AmoebaWindow.instance().dimensionSelector;
}
/**
@@ -767,4 +759,4 @@ public class AMOEBA extends Amas<World> implements IAMOEBA {
percepts = null;
}
-}
+}
\ No newline at end of file
diff --git a/AMOEBAonAMAK/src/kernel/AMOEBAMultiUI.java b/AMOEBAonAMAK/src/kernel/AMOEBAMultiUI.java
new file mode 100644
index 00000000..e0a80944
--- /dev/null
+++ b/AMOEBAonAMAK/src/kernel/AMOEBAMultiUI.java
@@ -0,0 +1,770 @@
+package kernel;
+
+import java.util.ArrayList;
+import java.util.HashMap;
+import java.util.HashSet;
+import java.util.List;
+import java.util.concurrent.locks.ReadWriteLock;
+import java.util.concurrent.locks.ReentrantReadWriteLock;
+import java.util.stream.Collectors;
+import java.util.stream.Stream;
+
+import agents.AmoebaAgent;
+import agents.context.Context;
+import agents.context.localModel.LocalModel;
+import agents.context.localModel.LocalModelMillerRegression;
+import agents.context.localModel.TypeLocalModel;
+import agents.head.Head;
+import agents.percept.Percept;
+import fr.irit.smac.amak.Agent;
+import fr.irit.smac.amak.Amas;
+import fr.irit.smac.amak.Configuration;
+import fr.irit.smac.amak.Scheduling;
+import fr.irit.smac.amak.tools.Log;
+import fr.irit.smac.amak.tools.RunLaterHelper;
+import fr.irit.smac.amak.ui.AmakPlot;
+import fr.irit.smac.amak.ui.VUIMulti;
+import gui.AmoebaMultiUIWindow;
+import gui.AmoebaWindow;
+import gui.DimensionSelector;
+import kernel.backup.IBackupSystem;
+import kernel.backup.ISaveHelper;
+import kernel.backup.SaveHelperDummy;
+import kernel.backup.SaveHelperImpl;
+import ncs.NCS;
+import utils.PrintOnce;
+
+/**
+ * The AMOEBA amas
+ *
+ */
+public class AMOEBAMultiUI extends Amas<World> implements IAMOEBA {
+ // -- Attributes
+
+
+ public VUIMulti vuiMulti;
+ /**
+ * Utility to save, autosave, and load amoebas.
+ */
+ public ISaveHelper saver = new SaveHelperDummy();
+
+ /**
+ * The system studied by the amoeba.
+ */
+ public StudiedSystem studiedSystem;
+
+ public AmoebaMultiUIWindow multiUIWindow;
+
+ private Head head;
+ private TypeLocalModel localModel = TypeLocalModel.MILLER_REGRESSION;
+ private HashMap<String, Double> perceptions = new HashMap<String, Double>();
+ private boolean useOracle = true;
+
+ private boolean runAll = false;
+ private boolean creationOfNewContext = true;
+ private boolean renderUpdate;
+
+ private int cycleWithoutRender = 0;
+
+ private ArrayList<Context> spatiallyAlteredContext = new ArrayList<>();
+ private ArrayList<Context> toKillContexts = new ArrayList<>();
+
+ private ArrayList<Context> lastModifiedContext = new ArrayList<>();
+
+ private ArrayList<Context> alteredContexts = new ArrayList<>();
+
+ private HashSet<Context> validContexts;
+ private ReadWriteLock validContextLock = new ReentrantReadWriteLock();
+
+ private HashSet<Context> neighborContexts ;
+ private ReadWriteLock neighborContextsLock = new ReentrantReadWriteLock();
+
+ public AmoebaData data;
+ private ArrayList<Percept> percepts;
+
+ /**
+ * Instantiates a new, empty, amoeba.
+ * For ease of use, consider using {@link AMOEBAMultiUI#AMOEBAMultiUI(String, StudiedSystem)}.
+ *
+ * @param studiedSystem
+ * the studied system
+ */
+ public AMOEBAMultiUI(AmoebaMultiUIWindow window, VUIMulti vui) {
+ super(window, vui, new World(), Scheduling.HIDDEN);
+ vuiMulti = vui;
+ }
+
+ /**
+ * Intantiate a default amoeba from a config file.
+ *
+ * @param path path to the config file.
+ */
+ public AMOEBAMultiUI(AmoebaMultiUIWindow window, VUIMulti vui, String path, StudiedSystem studiedSystem) {
+ super(window, vui, new World(), Scheduling.HIDDEN);
+ vuiMulti = vui;
+ this.studiedSystem = studiedSystem;
+ setRenderUpdate(true);
+ saver = new SaveHelperImpl(this);
+ saver.load(path);
+ }
+
+ @Override
+ protected void onInitialConfiguration() {
+ super.onInitialConfiguration();
+ if(Configuration.allowedSimultaneousAgentsExecution != 1) {
+ PrintOnce.print("Warning ! Multithreading is not currently sopported !\n"
+ + "Please use Configuration.allowedSimultaneousAgentsExecution=1");
+ }
+ getEnvironment().setAmoeba(this);
+ data = new AmoebaData();
+ }
+
+ @Override
+ protected void onRenderingInitialization() {
+ ((AmoebaMultiUIWindow) amasMultiUIWindow).initialize(this);
+ }
+
+ @Override
+ protected void onUpdateRender() {
+ // Update statistics
+ if(amasMultiUIWindow!=null) {
+
+ AmakPlot loopNCS = ((AmoebaMultiUIWindow)amasMultiUIWindow).getPlot("This loop NCS");
+ AmakPlot allNCS = ((AmoebaMultiUIWindow)amasMultiUIWindow).getPlot("All time NCS");
+ AmakPlot nbAgent = ((AmoebaMultiUIWindow)amasMultiUIWindow).getPlot("Number of agents");
+ AmakPlot errors = ((AmoebaMultiUIWindow)amasMultiUIWindow).getPlot("Errors");
+ AmakPlot distancesToModels = ((AmoebaMultiUIWindow)amasMultiUIWindow).getPlot("Distances to models");
+ AmakPlot gloabalMappingCriticality = ((AmoebaMultiUIWindow)amasMultiUIWindow).getPlot("Global Mapping Criticality");
+ AmakPlot timeExecution = ((AmoebaMultiUIWindow)amasMultiUIWindow).getPlot("Time Execution");
+ AmakPlot criticalities = ((AmoebaMultiUIWindow)amasMultiUIWindow).getPlot("Criticalities");
+
+
+ boolean notify = isRenderUpdate();
+
+ HashMap<NCS, Integer> thisLoopNCS = environment.getThisLoopNCS();
+ HashMap<NCS, Integer> allTimeNCS = environment.getAllTimeNCS();
+ for (NCS ncs : NCS.values()) {
+ loopNCS.addData(ncs, cycle, thisLoopNCS.get(ncs), notify);
+ allNCS.addData(ncs, cycle, allTimeNCS.get(ncs), notify);
+ }
+ nbAgent.addData("Percepts", cycle, getPercepts().size(), notify);
+ nbAgent.addData("Contexts", cycle, getContexts().size(), notify);
+ nbAgent.addData("Activated", cycle, environment.getNbActivatedAgent(), notify);
+
+ errors.addData("Criticality", cycle, head.getNormalizedCriticicality(), notify);
+ errors.addData("Mean criticality", cycle, head.getAveragePredictionCriticity(), notify);
+ errors.addData("Error allowed", cycle, head.getErrorAllowed(), notify);
+
+ distancesToModels.addData("Distance to model", cycle, head.getDistanceToRegression(), notify);
+ distancesToModels.addData("Average distance to model", cycle, head.criticalities.getCriticalityMean("distanceToRegression"), notify);
+ distancesToModels.addData("Allowed distance to model", cycle, head.getDistanceToRegressionAllowed(), notify);
+
+ gloabalMappingCriticality.addData("Current Value", cycle, head.getAverageSpatialCriticality(), notify);
+ gloabalMappingCriticality.addData("Zero", cycle, 0.0, notify);
+
+ timeExecution.addData("HeadPlay", cycle, data.executionTimesSums[0], notify);
+ timeExecution.addData("EndogenousPlay", cycle, data.executionTimesSums[1], notify);
+ timeExecution.addData("ContextSelfAnalisis", cycle, data.executionTimesSums[2], notify);
+ timeExecution.addData("IncompetentNCS", cycle, data.executionTimesSums[3], notify);
+ timeExecution.addData("ConcurrenceNCS", cycle, data.executionTimesSums[4], notify);
+ timeExecution.addData("NewContextNCS", cycle, data.executionTimesSums[5], notify);
+ timeExecution.addData("OvermappingNCS", cycle, data.executionTimesSums[6], notify);
+ timeExecution.addData("Other", cycle, data.executionTimesSums[7], notify);
+ timeExecution.addData("BestContextInNeighbors", cycle, data.executionTimesSums[8], notify);
+ timeExecution.addData("CreateContext", cycle, data.executionTimesSums[9], notify);
+ timeExecution.addData("UpdateStatitics", cycle, data.executionTimesSums[10], notify);
+ timeExecution.addData("ChildContext", cycle, data.executionTimesSums[11], notify);
+ timeExecution.addData("PotentialRequest", cycle, data.executionTimesSums[12], notify);
+
+ criticalities.addData("Prediction", cycle, data.evolutionCriticalityPrediction, notify);
+ criticalities.addData("Mapping", cycle, data.evolutionCriticalityMapping, notify);
+ criticalities.addData("Confidence", cycle, data.evolutionCriticalityConfidence, notify);
+ }
+
+ if (isRenderUpdate()) {
+ ((AmoebaMultiUIWindow)amasMultiUIWindow).mainVUI.updateCanvas();
+ updateAgentsVisualisation();
+ RunLaterHelper.runLater(() -> {resetCycleWithoutRender();});
+ }
+ }
+
+ @Override
+ protected void onSystemCycleBegin() {
+ if (cycle % 1000 == 0) {
+ Log.defaultLog.inform("AMOEBA", "Cycle " + cycle + ". Nb agents: "+getAgents().size());
+ }
+
+ if(isRenderUpdate()) {
+ incrementCycleWithoutRender();
+ /* deactivate render update and stop simulation if UI is too far
+ * behind the simulation (10 cycles)
+ */
+ if(getCycleWithoutRender() > 10) {
+ setRenderUpdate(false);
+ RunLaterHelper.runLater(()->{
+ // we (sadly) have to put it inside a runlater to correctly update the slider
+ getScheduler().stop();
+ });
+ Log.defaultLog.warning("AMOEBA UI", "Rendering cannot keep up with simulation, it has been deactivated. "
+ + "To reactiavte it, slow down the simulation and toggle the \"Allow Rendering\" button.");
+ }
+ }
+
+ if (studiedSystem != null) {
+
+ studiedSystem.playOneStep();
+
+ perceptions = studiedSystem.getOutput();
+
+
+ }
+
+ environment.preCycleActions();
+ head.clearAllUseableContextLists();
+ validContexts = null;
+ neighborContexts = null;
+ environment.resetNbActivatedAgent();
+ spatiallyAlteredContext.clear();
+ toKillContexts.clear();
+ lastModifiedContext.clear();
+ alteredContexts.clear();
+ }
+
+ synchronized private void incrementCycleWithoutRender() {
+ cycleWithoutRender += 1;
+ }
+
+ synchronized private void resetCycleWithoutRender() {
+ cycleWithoutRender = 0;
+ }
+
+ synchronized private int getCycleWithoutRender() {
+ return cycleWithoutRender;
+ }
+
+ @Override
+ protected void onSystemCycleEnd() {
+
+ if(studiedSystem != null) {
+ if(head.isActiveLearning()) {
+ studiedSystem.setActiveLearning(true);
+ studiedSystem.setSelfRequest(head.getSelfRequest());
+
+ }
+ }
+
+ super.onSystemCycleEnd();
+ if(saver != null)
+ saver.autosave();
+ }
+
+ /**
+ * Define what is done during a cycle, most importantly it launch agents.
+ *
+ * Every 1000 cycles, all Context are launched, allowing to delete themselves if
+ * they're too small. To change this behavior you have to modify this method.
+ */
+ @Override
+ public void cycle() {
+ cycle++;
+
+ onSystemCycleBegin();
+
+ // run percepts
+ List<Percept> synchronousPercepts = getPercepts().stream().filter(a -> a.isSynchronous())
+ .collect(Collectors.toList());
+ //Collections.sort(synchronousPercepts, new AgentOrderComparator());
+
+ for (Percept agent : synchronousPercepts) {
+ executor.execute(agent);
+ }
+ try {
+ perceptionPhaseSemaphore.acquire(synchronousPercepts.size());
+ } catch (InterruptedException e) {
+ e.printStackTrace();
+ }
+ try {
+ decisionAndActionPhasesSemaphore.acquire(synchronousPercepts.size());
+ } catch (InterruptedException e) {
+ e.printStackTrace();
+ }
+
+ // it is sometime useful to run all context agent
+ // especially to check if they're not too small,
+ // or after reactivating rendering.
+ if (cycle % 1000 == 0) {
+ runAll = true;
+ }
+
+ Stream<Context> contextStream = null;
+ if (runAll) {
+ contextStream = getContexts().stream(); // update all context
+ runAll = false;
+ } else {
+ HashSet<Context> vcontexts = getValidContexts();
+ if (vcontexts == null) {
+ vcontexts = new HashSet<>();
+ }
+ contextStream = vcontexts.stream(); // or only valid ones
+ }
+
+ getHeadAgent().setActivatedNeighborsContexts(new ArrayList<Context>(getNeighborContexts()));
+
+
+ // run contexts
+ List<Context> synchronousContexts = contextStream.filter(a -> a.isSynchronous()).collect(Collectors.toList());
+ //Collections.sort(synchronousContexts, new AgentOrderComparator());
+
+ for (Context agent : synchronousContexts) {
+ executor.execute(agent);
+ }
+ try {
+ perceptionPhaseSemaphore.acquire(synchronousContexts.size());
+ } catch (InterruptedException e) {
+ e.printStackTrace();
+ }
+ try {
+ decisionAndActionPhasesSemaphore.acquire(synchronousContexts.size());
+ } catch (InterruptedException e) {
+ e.printStackTrace();
+ }
+
+ // run head
+ List<Head> heads = new ArrayList<>();
+ heads.add(head);
+ List<Head> synchronousHeads = heads.stream().filter(a -> a.isSynchronous()).collect(Collectors.toList());
+ //Collections.sort(synchronousHeads, new AgentOrderComparator());
+
+ for (Head agent : synchronousHeads) {
+ executor.execute(agent);
+ }
+ try {
+ perceptionPhaseSemaphore.acquire(synchronousHeads.size());
+ } catch (InterruptedException e) {
+ e.printStackTrace();
+ }
+ try {
+ decisionAndActionPhasesSemaphore.acquire(synchronousHeads.size());
+ } catch (InterruptedException e) {
+ e.printStackTrace();
+ }
+
+ removePendingAgents();
+
+ addPendingAgents();
+
+ onSystemCycleEnd();
+
+ if (!Configuration.commandLineMode) {
+ onUpdateRender();
+
+ if(Configuration.waitForGUI) {
+ // we put an action in JavaFX rendering queue
+ RunLaterHelper.runLater(() -> {
+ renderingPhaseSemaphore.release();
+ });
+ // and wait for it to finish
+ try {
+ renderingPhaseSemaphore.acquire();
+ } catch (InterruptedException e) {
+ Log.defaultLog.error("[AMAS GUI]", "Failed to wait for GUI update to finish.");
+ e.printStackTrace();
+ }
+ // now the queue should be clear
+ }
+ }
+
+ }
+
+ @Override
+ public HashMap<String, Double> learn(HashMap<String, Double> perceptionsActionState) {
+ StudiedSystem ss = studiedSystem;
+ studiedSystem = null;
+ setPerceptionsAndActionState(perceptionsActionState);
+ cycle();
+ studiedSystem = ss;
+
+ return null;
+ }
+
+ @Override
+ public double request(HashMap<String, Double> perceptionsActionState) {
+ boolean usingOracle = isUseOracle();
+ if (usingOracle)
+ head.changeOracleConnection();
+ StudiedSystem ss = studiedSystem;
+ studiedSystem = null;
+ setPerceptionsAndActionState(perceptionsActionState);
+ cycle();
+ if (usingOracle)
+ head.changeOracleConnection();
+ studiedSystem = ss;
+ return getAction();
+ }
+
+ @Override
+ public HashMap<String, Double> maximize(HashMap<String, Double> known){
+ ArrayList<Percept> percepts = getPercepts();
+ ArrayList<Percept> unknown = new ArrayList<>(percepts);
+ unknown.removeIf(p ->known.containsKey(p.getName()));
+ //System.out.println("known : "+known.keySet());
+ //System.out.println("unknow : "+unknown);
+ if(unknown.isEmpty()) {
+ return null;
+ }
+
+ //get partially activated context
+ ArrayList<Context> pac = new ArrayList<>();
+ for(Context c : getContexts()) {
+ boolean good = true;
+ for(String p : known.keySet()) {
+ if(!c.getRangeByPerceptName(p).contains2(known.get(p))) {
+ good = false;
+ break;
+ }
+ }
+ if(good) pac.add(c);
+ }
+
+ ArrayList<HashMap<String, Double>> sol = new ArrayList<>();
+ for(Context c : pac) {
+ sol.add(c.getLocalModel().getMaxWithConstraint(known));
+ }
+ HashMap<String, Double> max = new HashMap<>();
+
+ Double maxValue = Double.NEGATIVE_INFINITY;
+ max.put("oracle", maxValue);
+ //find best solution
+ for(HashMap<String, Double> s : sol) {
+ if(s.get("oracle") > maxValue) {
+ maxValue = s.get("oracle");
+ max = s;
+ }
+ }
+ return max;
+ }
+
+ public LocalModel buildLocalModel(Context context) {
+ switch (localModel) {
+ case MILLER_REGRESSION:
+ return new LocalModelMillerRegression(context);
+
+ default:
+ throw new IllegalArgumentException("Unknown model " + localModel + ".");
+ }
+ }
+
+ /**
+ * Activate or deactivate the graphical scheduler. Allowing or denying the user
+ * to change the simulation speed.
+ *
+ * @param allow
+ */
+ public void allowGraphicalScheduler(boolean allow) {
+ if (!Configuration.commandLineMode) {
+ ((AmoebaMultiUIWindow)amasMultiUIWindow).schedulerToolbar.setDisable(!allow);
+ }
+ }
+
+ @Override
+ public void clearAgents() {
+ List<Agent<? extends Amas<World>, World>> agents = getAgents();
+ for (Agent<? extends Amas<World>, World> agent : agents) {
+ AmoebaAgent amoebaAgent = (AmoebaAgent) agent;
+ amoebaAgent.destroy();
+ }
+ this.head = null;
+ super.removePendingAgents();
+ }
+
+ /**
+ * Called when a {@link IBackupSystem} has finished loading the amoeba.
+ */
+ public void onLoadEnded() {
+ super.addPendingAgents();
+ nextCycleRunAllAgents();
+ if(!Configuration.commandLineMode) {
+ ((AmoebaMultiUIWindow)amasMultiUIWindow).dimensionSelector.update(getPercepts());
+ updateAgentsVisualisation();
+ }
+ }
+
+ @Override
+ public void setCreationOfNewContext(boolean creationOfNewContext) {
+ this.creationOfNewContext = creationOfNewContext;
+ }
+
+ @Override
+ public void setHead(Head head) {
+ this.head = head;
+ }
+
+ @Override
+ public void setLocalModel(TypeLocalModel localModel) {
+ this.localModel = localModel;
+ }
+
+ /**
+ * Activate or deactivate rendering of agents at runtime.
+ *
+ * @param renderUpdate
+ */
+ public void setRenderUpdate(boolean renderUpdate) {
+ if (!Configuration.commandLineMode) {
+ this.renderUpdate = renderUpdate;
+ ((AmoebaMultiUIWindow)amasMultiUIWindow).toggleRender.setSelected(renderUpdate);
+ if(renderUpdate == true)
+ nextCycleRunAllAgents();
+ }
+ }
+
+ /**
+ * Set input used by percepts and oracle.
+ *
+ * @param perceptionsAndActions
+ */
+ public void setPerceptionsAndActionState(HashMap<String, Double> perceptionsAndActions) {
+ this.perceptions = perceptionsAndActions;
+ }
+
+ /**
+ * Get the last prediction from the system.
+ *
+ * @return
+ */
+ public double getAction() {
+ return head.getAction();
+ }
+
+ public ArrayList<Context> getContexts() {
+ ArrayList<Context> contexts = new ArrayList<>();
+ for (Agent<? extends Amas<World>, World> agent : getAgents()) {
+ if ((agent instanceof Context)) {
+ contexts.add((Context) agent);
+ }
+ }
+ return contexts;
+ }
+
+ public ArrayList<Head> getHeads() {
+ ArrayList<Head> heads = new ArrayList<>();
+ heads.add(head);
+ return heads;
+ }
+
+ public ArrayList<Percept> getPercepts() {
+ if(percepts == null || percepts.size()==0) {
+ setPercepts();
+ }
+ return percepts;
+ }
+
+ /**
+ * Get the value for a perception
+ * @param key key of the perception
+ * @return the value of the perception
+ */
+ public Double getPerceptions(String key) {
+ return this.perceptions.get(key);
+ }
+
+ @Override
+ public boolean isCreationOfNewContext() {
+ return creationOfNewContext;
+ }
+
+ /**
+ * Tell AMOEBA to run all (contexts) agent for the next cycle.
+ */
+ public void nextCycleRunAllAgents() {
+ runAll = true;
+ }
+
+ /**
+ * Is rendering activated ?
+ * @return
+ */
+ public boolean isRenderUpdate() {
+ return (!Configuration.commandLineMode) && renderUpdate;
+ }
+
+ /**
+ * Should AMOEBA use the oracle ? If false then AMOEBA will not learn.
+ * @return
+ */
+ public boolean isUseOracle() {
+ return useOracle;
+ }
+
+ /**
+ * Ask the agents to update their visualization, and update some UI element related to them.
+ */
+ public void updateAgentsVisualisation() {
+ for(Agent<? extends Amas<World>, World> a : getAgents()) {
+ a.onUpdateRender();
+ }
+ ((AmoebaMultiUIWindow)amasMultiUIWindow).point.move(((AmoebaMultiUIWindow)amasMultiUIWindow).dimensionSelector.d1().getValue(), ((AmoebaMultiUIWindow)amasMultiUIWindow).dimensionSelector.d2().getValue());
+ ((AmoebaMultiUIWindow)amasMultiUIWindow).rectangle.setHeight(2*getEnvironment().getContextCreationNeighborhood(null, ((AmoebaMultiUIWindow)amasMultiUIWindow).dimensionSelector.d2()));
+ ((AmoebaMultiUIWindow)amasMultiUIWindow).rectangle.setWidth(2*getEnvironment().getContextCreationNeighborhood(null, ((AmoebaMultiUIWindow)amasMultiUIWindow).dimensionSelector.d1()));
+ ((AmoebaMultiUIWindow)amasMultiUIWindow).rectangle.move(((AmoebaMultiUIWindow)amasMultiUIWindow).dimensionSelector.d1().getValue() - getEnvironment().getContextCreationNeighborhood(null, ((AmoebaMultiUIWindow)amasMultiUIWindow).dimensionSelector.d1()), ((AmoebaMultiUIWindow)amasMultiUIWindow).dimensionSelector.d2().getValue() - getEnvironment().getContextCreationNeighborhood(null, ((AmoebaMultiUIWindow)amasMultiUIWindow).dimensionSelector.d2()));
+ ((AmoebaMultiUIWindow)amasMultiUIWindow).mainVUI.updateCanvas();
+ ((AmoebaMultiUIWindow)amasMultiUIWindow).point.toFront();
+ ((AmoebaMultiUIWindow)amasMultiUIWindow).point.setInfo(getCursorInfo());
+ }
+
+ /**
+ * The tool telling which dimension to display
+ * @return
+ */
+ public DimensionSelector getDimensionSelector() {
+ return ((AmoebaMultiUIWindow)amasMultiUIWindow).dimensionSelector;
+ }
+
+ /**
+ * Get the last perception.
+ * @return
+ */
+ public HashMap<String, Double> getPerceptionsAndActionState() {
+ return perceptions;
+ }
+
+ /**
+ * Set the studied system that will be used to learn with the internal scheduler.
+ * @param studiedSystem
+ */
+ public void setStudiedSystem(StudiedSystem studiedSystem) {
+ this.studiedSystem = studiedSystem;
+ }
+
+ public Head getHeadAgent() {
+ return head;
+ }
+
+ public ArrayList<Context> getSpatiallyAlteredContextForUnityUI() {
+ return spatiallyAlteredContext;
+ }
+
+ public void addSpatiallyAlteredContextForUnityUI(Context ctxt) {
+ if(!ctxt.isFlat())
+ spatiallyAlteredContext.add(ctxt);
+ }
+
+ public ArrayList<Context> getToKillContextsForUnityUI() {
+ return toKillContexts;
+ }
+
+ public void addToKillContextForUnityUI(Context ctxt) {
+ toKillContexts.add(ctxt);
+ }
+
+ public void addLastmodifiedContext(Context context) {
+ if(!lastModifiedContext.contains(context)) {
+ lastModifiedContext.add(context);
+ }
+ }
+
+ public ArrayList<Context> getLastModifiedContexts(){
+ return lastModifiedContext;
+ }
+
+ /**
+ * Adds the altered context.
+ *
+ * @param context the context
+ */
+ public void addAlteredContext(Context context) {
+ alteredContexts.add(context);
+ }
+
+ /**
+ * Return the current set of valid contexts.
+ *
+ * Synchronized with a readLock.
+ *
+ * @return
+ */
+ public HashSet<Context> getValidContexts() {
+ HashSet<Context> ret;
+ validContextLock.readLock().lock();
+ if (validContexts == null) {
+ ret = null;
+ } else {
+ ret = new HashSet<>(validContexts);
+ }
+ validContextLock.readLock().unlock();
+ return ret;
+ }
+
+ /**
+ * Update the set of valid context. The update is done with an intersect of the
+ * previous and new set.
+ *
+ * Synchronized with a writeLock.
+ * @param validContexts new validContexts set.
+ */
+ @SuppressWarnings("unchecked")
+ public void updateNeighborContexts(HashSet<Context> neighborContexts) {
+ neighborContextsLock.writeLock().lock();
+ if (this.neighborContexts == null) {
+ this.neighborContexts = (HashSet<Context>) neighborContexts.clone();
+ } else {
+ this.neighborContexts.retainAll(neighborContexts);
+ }
+ neighborContextsLock.writeLock().unlock();
+ }
+
+ public HashSet<Context> getNeighborContexts() {
+ HashSet<Context> ret;
+ neighborContextsLock.readLock().lock();
+ if (neighborContexts == null) {
+ ret = null;
+ } else {
+ ret = new HashSet<>(neighborContexts);
+ }
+ neighborContextsLock.readLock().unlock();
+ return ret;
+ }
+
+ /**
+ * Update the set of valid context. The update is done with an intersect of the
+ * previous and new set.
+ *
+ * Synchronized with a writeLock.
+ * @param validContexts new validContexts set.
+ */
+ @SuppressWarnings("unchecked")
+ public void updateValidContexts(HashSet<Context> validContexts) {
+ validContextLock.writeLock().lock();
+ if (this.validContexts == null) {
+ this.validContexts = (HashSet<Context>) validContexts.clone();
+ } else {
+ this.validContexts.retainAll(validContexts);
+ }
+ validContextLock.writeLock().unlock();
+ }
+
+ private String getCursorInfo() {
+ String message = "";
+ for(Percept pct : getPercepts()) {
+ message += pct.getName() + "\t" + pct.getValue() +"\t[ " + pct.getMin() +" ; " + pct.getMax() + " ]\n" ;
+ }
+ return message;
+ }
+
+ public void setPercepts() {
+ percepts = new ArrayList<Percept>();
+ for (Agent<? extends Amas<World>, World> agent : getAgents()) {
+ if ((agent instanceof Percept)) {
+ Percept p = (Percept) agent;
+ if(!p.isDying()) {
+ percepts.add(p);
+ }
+ }
+ }
+ }
+
+ public void addPercept(Percept pct) {
+ percepts = null;
+ }
+
+}
--
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