diff --git a/.gitignore b/.gitignore
index c578a02bd73be65fe626f2446fbadc6d695411f3..eea908e3148e5530c62b46d7390876f9cdb4a371 100644
--- a/.gitignore
+++ b/.gitignore
@@ -20,6 +20,8 @@
*.rar
src/main/resources/output.csv
+src/main/resources/pythonOutput/*.csv
+src/main/resources/pythonOutput/*.png
# virtual machine crash logs, see http://www.java.com/en/download/help/error_hotspot.xml
hs_err_pid*
diff --git a/LICENSE b/LICENSE
index 261eeb9e9f8b2b4b0d119366dda99c6fd7d35c64..9ea99b2e6e9aadca1fff47a3febfcd7cfa9afbae 100644
--- a/LICENSE
+++ b/LICENSE
@@ -127,7 +127,7 @@
reproduction, and distribution of the Work otherwise complies with
the conditions stated in this License.
- 5. Submission of Contributions. Unless You explicitly state otherwise,
+ 5. Submission of Contributions. Unless You explicitly SEIRSState otherwise,
any Contribution intentionally submitted for inclusion in the Work
by You to the Licensor shall be under the terms and conditions of
this License, without any additional terms or conditions.
diff --git a/outputToGraph.py b/outputToGraph.py
index 52739c54d4afb39f0acec846d1315660bd455f98..ed40da3a8e7714c00ba882d257c7ea90a3fd347f 100644
--- a/outputToGraph.py
+++ b/outputToGraph.py
@@ -1,12 +1,28 @@
import csv
+import yaml
import matplotlib.pyplot as plt
+OUTPUT_FILE_LOCATION = 'src/main/resources/output.csv'
+OUTPUT_FOLDER = 'src/main/resources/pythonOutput'
+JAR_LOCATION = 'out/artifacts/SMA_SEIR_jar/SMA-SEIR.jar'
+YAML_FILE = 'src/main/resources/parameters.yaml'
+
def readCSV(fileName):
with open(fileName, 'r') as csvfile:
reader = csv.reader(csvfile)
return list(reader)
-def showDiagram(data):
+def getValues() :
+ with open(YAML_FILE, 'r') as file:
+ data = yaml.safe_load(file)
+ incubation = data['incubationRate']
+ infection = data['infectionRate']
+ recovery = data['recoveryRate']
+ looseImmunity = data['looseImmunityRate']
+ return f"incubationRate : {incubation} InfectionRate : {infection}\n RecoveryRate : {recovery} LooseImmunityRate : {looseImmunity}"
+
+def makeDiagram(fileName):
+ data = readCSV(fileName)
suceptible = []
exposed = []
recovred = []
@@ -18,6 +34,7 @@ def showDiagram(data):
recovred.append(int(row[2]))
infected.append(int(row[3]))
+ plt.title(getValues())
plt.plot(suceptible, label='Suceptible', color='gray')
plt.plot(exposed, label='Exposed', color='yellow')
plt.plot(infected, label='Infected', color='red')
@@ -25,14 +42,36 @@ def showDiagram(data):
plt.xlabel('Cycles')
plt.ylabel('Peoples')
plt.legend()
- plt.show()
+ plt.savefig(f'{fileName.split(".")[0]}.png')
+ #plt.show()
+ plt.close()
def runJavaJar(fileName):
import subprocess
subprocess.call(['java', '-jar', fileName])
+
+def copyToOutputFolder(fileName):
+ import shutil
+ shutil.copy(OUTPUT_FILE_LOCATION, f"{OUTPUT_FOLDER}/{fileName}")
+
+def createFile():
+ with open(OUTPUT_FILE_LOCATION, 'w') as file:
+ file.write('')
+
+def editYaml(key,value):
+ with open(YAML_FILE, 'r') as file:
+ data = yaml.safe_load(file)
+ data[key] = value
-runJavaJar('out/artifacts/SMA_SEIR_jar/SMA-SEIR.jar')
+ with open(YAML_FILE, 'w') as file:
+ yaml.dump(data, file)
-# data = readCSV("src/main/resources/output.csv")
+# if __name__ == "__main__":
+# for i in range(10):
+# editYaml("infectionRate", 0.05+(0.05*i))
+# runJavaJar(JAR_LOCATION)
+# copyToOutputFolder(f"output{i}.csv")
+# makeDiagram(f"{OUTPUT_FOLDER}/output{i}.csv")
-# showDiagram(data)
\ No newline at end of file
+runJavaJar(JAR_LOCATION)
+makeDiagram(OUTPUT_FILE_LOCATION)
\ No newline at end of file
diff --git a/src/main/java/RunExperiment.java b/src/main/java/RunExperiment.java
new file mode 100644
index 0000000000000000000000000000000000000000..2084dc0588e48bbcb60a8eb77d65a2f80b495613
--- /dev/null
+++ b/src/main/java/RunExperiment.java
@@ -0,0 +1,54 @@
+import agents.RandomWalkingAgent;
+import agents.SEIRSAgent;
+import agents.states.InfectedSEIRSState;
+import environment.SEIRSEnvironment;
+import models.Parameters;
+import scheduler.FairAsynchronousScheduler;
+import scheduler.FairSynchronousScheduler;
+import scheduler.Scheduler;
+import sma.SEIRS_SMA;
+import sma.SMA;
+import utils.YamlReader;
+
+import java.awt.*;
+import java.util.Random;
+
+public class RunExperiment {
+
+ public static void main(String[] args) {
+ SMA sma = new SEIRS_SMA();
+ Parameters parameters = YamlReader.getParams();
+ Random r = new Random(parameters.getSeed());
+
+ SEIRSAgent[] agents = new RandomWalkingAgent[parameters.getPopulation()];
+ Scheduler scheduler;
+ SEIRSEnvironment environment = new SEIRSEnvironment(parameters.getSize(),agents);
+
+ //Populate agents
+ for (int i = 0; i<parameters.getPopulation();i++) {
+ Point position = new Point(r.nextInt(parameters.getSize()),r.nextInt(parameters.getSize()));
+ RandomWalkingAgent agent = new RandomWalkingAgent(position,parameters.getSeed()+i,environment);
+ agents[i] = agent;
+ }
+
+ //Infect agents
+ for (int i=0 ; i< parameters.getNbOfPatientZero(); i++) {
+ SEIRSAgent agent = agents[(r.nextInt(parameters.getPopulation()))];
+ while (agent.getState() instanceof InfectedSEIRSState) {
+ agent = agents[(r.nextInt(parameters.getPopulation()))];
+ }
+ agent.changeState(new InfectedSEIRSState(agent));
+ }
+
+ //create scheduler
+ if (parameters.isSynchronousMode()) {
+ scheduler = new FairSynchronousScheduler(parameters.getSeed());
+ } else {
+ scheduler = new FairAsynchronousScheduler();
+ }
+
+ sma.init(environment,scheduler,agents);
+ sma.run();
+ }
+
+}
diff --git a/src/main/java/agents/Agent.java b/src/main/java/agents/Agent.java
new file mode 100644
index 0000000000000000000000000000000000000000..07fba3ca7c4a95a1fad565c22740022945f3b228
--- /dev/null
+++ b/src/main/java/agents/Agent.java
@@ -0,0 +1,6 @@
+package agents;
+
+public interface Agent {
+
+ void wakeUp();
+}
diff --git a/src/main/java/agents/Agent2D.java b/src/main/java/agents/Agent2D.java
new file mode 100644
index 0000000000000000000000000000000000000000..efc183b074d4b9676452696b70608233d7897348
--- /dev/null
+++ b/src/main/java/agents/Agent2D.java
@@ -0,0 +1,8 @@
+package agents;
+
+import java.awt.*;
+
+public interface Agent2D extends Agent {
+
+ Point getPosition();
+}
diff --git a/src/main/java/agents/RandomWalkingAgent.java b/src/main/java/agents/RandomWalkingAgent.java
new file mode 100644
index 0000000000000000000000000000000000000000..09f3c0b0d5c9c48bb45366c9898f9804d9fe35e3
--- /dev/null
+++ b/src/main/java/agents/RandomWalkingAgent.java
@@ -0,0 +1,102 @@
+package agents;
+
+import agents.states.InfectedSEIRSState;
+import agents.states.SEIRSState;
+import agents.states.SuceptibleSEIRSState;
+import environment.SquareEnvironment2D;
+import environment.SEIRSEnvironment;
+import utils.YamlReader;
+
+import java.awt.Point;
+import java.util.Random;
+
+public class RandomWalkingAgent implements SEIRSAgent {
+
+ private Point position;
+ private final Random r;
+ private final SEIRSEnvironment environment;
+ private SEIRSState SEIRSState;
+
+ public RandomWalkingAgent(Point position, int seed, SEIRSEnvironment environment) {
+ this.position = position;
+ this.SEIRSState = new SuceptibleSEIRSState(this);
+ this.environment = environment;
+ this.r = new Random(seed);
+ }
+
+ private void move() {
+ SEIRSState.onMovement();
+ int move = r.nextInt(4);
+ Point newPosition = switch (move) {
+ case SquareEnvironment2D.LEFT -> new Point(position.x- SEIRSEnvironment.RADIUS,position.y);
+ case SquareEnvironment2D.RIGHT -> new Point(position.x+ SEIRSEnvironment.RADIUS,position.y);
+ case SquareEnvironment2D.UP -> new Point(position.x,position.y- SEIRSEnvironment.RADIUS);
+ case SquareEnvironment2D.DOWN -> new Point(position.x,position.y+ SEIRSEnvironment.RADIUS);
+ default -> throw new IllegalStateException("Unexpected value: " + move);
+ };
+ if (newPosition.x <= environment.getSize()-1 && newPosition.x >= 0 && newPosition.y <= environment.getSize()-1 && newPosition.y >=0 ) {
+ environment.notifyNewPosition(position,newPosition ,this);
+ position = newPosition;
+ }
+ }
+
+ @Override
+ public void wakeUp() {
+ move();
+ }
+
+
+ @Override
+ public void changeState(SEIRSState SEIRSState) { this.SEIRSState = SEIRSState; }
+
+ @Override
+ public boolean isExposed() {
+ boolean isExposed = false;
+ for (SEIRSAgent neighbor: environment.getNeighbors(position)) {
+ if ((neighbor).getState() instanceof InfectedSEIRSState) {
+ int roll = r.nextInt(10000)+1;
+ if (roll <= YamlReader.getParams().getInfectionRate()*10000) {
+ isExposed = true;
+ }
+ }
+ }
+ return isExposed;
+ }
+
+ @Override
+ public boolean isInfected() {
+ boolean isSick = false;
+ int roll = r.nextInt(10000)+1;
+ if (roll <= YamlReader.getParams().getIncubationRate()*10000) {
+ isSick = true;
+ }
+ return isSick;
+ }
+
+ @Override
+ public boolean isRecovered() {
+ boolean isHealed = false;
+ int roll = r.nextInt(10000)+1;
+ if (roll <= YamlReader.getParams().getRecoveryRate()*10000) {
+ isHealed = true;
+ }
+ return isHealed;
+ }
+
+ @Override
+ public boolean hasLostImmunity() {
+ boolean hasLostImmunity = false;
+ int roll = r.nextInt(10000)+1;
+ if (roll <= YamlReader.getParams().getLooseImmunityRate()*10000) {
+ hasLostImmunity = true;
+ }
+ return hasLostImmunity;
+ }
+
+ @Override
+ public SEIRSState getState() { return this.SEIRSState; }
+
+ @Override
+ public Point getPosition() { return position; }
+
+}
diff --git a/src/main/java/agents/SEIRSAgent.java b/src/main/java/agents/SEIRSAgent.java
new file mode 100644
index 0000000000000000000000000000000000000000..b926e8d65069c7221e3dc3c6cfb03eefb0ded984
--- /dev/null
+++ b/src/main/java/agents/SEIRSAgent.java
@@ -0,0 +1,13 @@
+package agents;
+
+import agents.states.SEIRSState;
+
+public interface SEIRSAgent extends Agent2D {
+
+ void changeState(SEIRSState SEIRSState);
+ SEIRSState getState();
+ boolean isExposed();
+ boolean isInfected();
+ boolean isRecovered();
+ boolean hasLostImmunity();
+}
diff --git a/src/main/java/agents/states/ExposedSEIRSState.java b/src/main/java/agents/states/ExposedSEIRSState.java
new file mode 100644
index 0000000000000000000000000000000000000000..b4b39c32e64849bfecc876d0eb67edf5013c3651
--- /dev/null
+++ b/src/main/java/agents/states/ExposedSEIRSState.java
@@ -0,0 +1,20 @@
+package agents.states;
+
+public class ExposedSEIRSState extends SEIRSState {
+
+ public ExposedSEIRSState(agents.SEIRSAgent SEIRSAgent) {
+ super(SEIRSAgent);
+ }
+
+ @Override
+ public void onMovement() {
+ if (agent.isInfected()) {
+ agent.changeState(new InfectedSEIRSState(agent));
+ }
+ }
+
+ @Override
+ public String toString() {
+ return EXPOSED;
+ }
+}
diff --git a/src/main/java/agents/states/InfectedSEIRSState.java b/src/main/java/agents/states/InfectedSEIRSState.java
new file mode 100644
index 0000000000000000000000000000000000000000..db3bfc874d4cd6d6971a8e066bfe891839e8e435
--- /dev/null
+++ b/src/main/java/agents/states/InfectedSEIRSState.java
@@ -0,0 +1,20 @@
+package agents.states;
+
+public class InfectedSEIRSState extends SEIRSState {
+
+ public InfectedSEIRSState(agents.SEIRSAgent SEIRSAgent) {
+ super(SEIRSAgent);
+ }
+
+ @Override
+ public void onMovement() {
+ if (agent.isRecovered()) {
+ agent.changeState(new RecoveredSEIRSState(agent));
+ }
+ }
+
+ @Override
+ public String toString() {
+ return INFECTED;
+ }
+}
diff --git a/src/main/java/agents/states/RecoveredSEIRSState.java b/src/main/java/agents/states/RecoveredSEIRSState.java
new file mode 100644
index 0000000000000000000000000000000000000000..f9643243f0f0ebf4ead02fe3e166afa9b32c1620
--- /dev/null
+++ b/src/main/java/agents/states/RecoveredSEIRSState.java
@@ -0,0 +1,22 @@
+package agents.states;
+
+import agents.SEIRSAgent;
+
+public class RecoveredSEIRSState extends SEIRSState {
+
+ public RecoveredSEIRSState(SEIRSAgent SEIRSAgent) {
+ super(SEIRSAgent);
+ }
+
+ @Override
+ public void onMovement() {
+ if (agent.hasLostImmunity()) {
+ agent.changeState(new SuceptibleSEIRSState(agent));
+ }
+ }
+
+ @Override
+ public String toString() {
+ return RECOVERED;
+ }
+}
diff --git a/src/main/java/sma/agents/states/State.java b/src/main/java/agents/states/SEIRSState.java
similarity index 64%
rename from src/main/java/sma/agents/states/State.java
rename to src/main/java/agents/states/SEIRSState.java
index c797634ba06608c026db2d390d9ac0a7a5bcc5f8..78725a4808b0ff3541a126aee59485e4f61758a2 100644
--- a/src/main/java/sma/agents/states/State.java
+++ b/src/main/java/agents/states/SEIRSState.java
@@ -1,17 +1,17 @@
-package sma.agents.states;
+package agents.states;
-import sma.agents.Agent;
+import agents.SEIRSAgent;
-public abstract class State {
+public abstract class SEIRSState {
public final static String EXPOSED = "EXPOSED";
public final static String INFECTED = "INFECTED";
public final static String SUCEPTIBLE = "SUCEPTIBLE";
public final static String RECOVERED = "RECOVERED";
- protected Agent agent;
+ protected final agents.SEIRSAgent agent;
- State(Agent agent) {
+ SEIRSState(SEIRSAgent agent) {
this.agent = agent;
}
diff --git a/src/main/java/agents/states/SuceptibleSEIRSState.java b/src/main/java/agents/states/SuceptibleSEIRSState.java
new file mode 100644
index 0000000000000000000000000000000000000000..f333f05c9fae315547311f1989729fddbc7bde98
--- /dev/null
+++ b/src/main/java/agents/states/SuceptibleSEIRSState.java
@@ -0,0 +1,20 @@
+package agents.states;
+
+public class SuceptibleSEIRSState extends SEIRSState {
+
+ public SuceptibleSEIRSState(agents.SEIRSAgent SEIRSAgent) {
+ super(SEIRSAgent);
+ }
+
+ @Override
+ public void onMovement() {
+ if (agent.isExposed()) {
+ agent.changeState(new ExposedSEIRSState(agent));
+ }
+ }
+
+ @Override
+ public String toString() {
+ return SUCEPTIBLE;
+ }
+}
diff --git a/src/main/java/environment/Environment.java b/src/main/java/environment/Environment.java
new file mode 100644
index 0000000000000000000000000000000000000000..100ed085ce0e990d6aa695c6b744cbeff5f1bb19
--- /dev/null
+++ b/src/main/java/environment/Environment.java
@@ -0,0 +1,4 @@
+package environment;
+
+public interface Environment {
+}
diff --git a/src/main/java/environment/Environment2D.java b/src/main/java/environment/Environment2D.java
new file mode 100644
index 0000000000000000000000000000000000000000..59a1643cdf6e8e121a319d8b0c3663cb6d83c66d
--- /dev/null
+++ b/src/main/java/environment/Environment2D.java
@@ -0,0 +1,10 @@
+package environment;
+
+import agents.Agent;
+
+import java.awt.*;
+
+public interface Environment2D extends Environment {
+
+ void notifyNewPosition(Point oldPosition, Point newPosition, Agent agent);
+}
diff --git a/src/main/java/sma/environment/SquaredChunksEnvironment.java b/src/main/java/environment/SEIRSEnvironment.java
similarity index 73%
rename from src/main/java/sma/environment/SquaredChunksEnvironment.java
rename to src/main/java/environment/SEIRSEnvironment.java
index f835005c5c25df2b1d54c496057d4793217efae0..c4ab08ab5ed2a18dbbdc92550d047c49ee701dca 100644
--- a/src/main/java/sma/environment/SquaredChunksEnvironment.java
+++ b/src/main/java/environment/SEIRSEnvironment.java
@@ -1,23 +1,25 @@
-package sma.environment;
+package environment;
-import sma.agents.Agent;
-import sma.agents.states.State;
+import agents.Agent;
+import agents.SEIRSAgent;
+import agents.states.SEIRSState;
import java.awt.*;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
-public class SquaredChunksEnvironment implements Environment {
+@SuppressWarnings("unchecked")
+public class SEIRSEnvironment implements SquareEnvironment2D {
public final static int RADIUS = 10;
public final static int CHUNK_SIZE = 2*RADIUS;
- public int size;
- private Agent[] agents;
- private List<Agent>[][] chunks;
+ public final int size;
+ private final SEIRSAgent[] agents;
+ private List<SEIRSAgent>[][] chunks;
- public SquaredChunksEnvironment(int size, Agent[] agents) {
+ public SEIRSEnvironment(int size, SEIRSAgent[] agents) {
this.agents = agents;
this.size = size;
}
@@ -29,7 +31,7 @@ public class SquaredChunksEnvironment implements Environment {
chunks[i][j] = new ArrayList<>();
}
}
- for (Agent agent : agents) {
+ for (SEIRSAgent agent : agents) {
int x = agent.getPosition().x/CHUNK_SIZE;
int y = agent.getPosition().y/CHUNK_SIZE;
chunks[x][y].add(agent);
@@ -57,12 +59,12 @@ public class SquaredChunksEnvironment implements Environment {
};
}
- private List<Agent> getChunkNeighbors(int relativeTo, Point p) {
+ private List<SEIRSAgent> getChunkNeighbors(int relativeTo, Point p) {
Point newPosition = getRelativePoint(relativeTo,p);
Point chunk = new Point(newPosition.x/CHUNK_SIZE,newPosition.y/CHUNK_SIZE);
- var neighbors = new ArrayList<Agent>();
+ List<SEIRSAgent> neighbors = new ArrayList<>();
try{
- for (Agent agent : chunks[chunk.x][chunk.y]) {
+ for (SEIRSAgent agent : chunks[chunk.x][chunk.y]) {
if (detectCollision(p, agent.getPosition())) {
neighbors.add(agent);
}
@@ -73,12 +75,11 @@ public class SquaredChunksEnvironment implements Environment {
return neighbors;
}
- @Override
- public List<Agent> getNeighbors(Point position) {
+ public List<SEIRSAgent> getNeighbors(Point position) {
if (chunks == null) {
throw new IllegalStateException("Chunks aren't initialized, you should use the initiateMethod() first.");
}
- var neighbors = new ArrayList<Agent>();
+ var neighbors = new ArrayList<SEIRSAgent>();
for (int i = 0; i < MAX_CHUNK; i++) {
neighbors.addAll(getChunkNeighbors(i,position));
@@ -86,30 +87,33 @@ public class SquaredChunksEnvironment implements Environment {
return neighbors;
}
- @Override
public void notifyNewPosition(Point oldPosition, Point newPosition, Agent agent) {
if (chunks == null) {
throw new IllegalStateException("Chunks aren't initialized, you should use the initiateMethod() first.");
}
if (oldPosition.x/CHUNK_SIZE != newPosition.x/CHUNK_SIZE || oldPosition.y/CHUNK_SIZE != newPosition.y/CHUNK_SIZE) {
- chunks[oldPosition.x/CHUNK_SIZE][oldPosition.y/CHUNK_SIZE].remove(agent);
- chunks[newPosition.x/CHUNK_SIZE][newPosition.y/CHUNK_SIZE].add(agent);
+ chunks[oldPosition.x/CHUNK_SIZE][oldPosition.y/CHUNK_SIZE].remove((SEIRSAgent) agent);
+ chunks[newPosition.x/CHUNK_SIZE][newPosition.y/CHUNK_SIZE].add((SEIRSAgent) agent);
}
}
- @Override
public HashMap<String,Integer> getAgentStatus() {
var map = new HashMap<String,Integer>();
- map.put(State.EXPOSED,0);
- map.put(State.INFECTED,0);
- map.put(State.RECOVERED,0);
- map.put(State.SUCEPTIBLE,0);
+ map.put(SEIRSState.EXPOSED,0);
+ map.put(SEIRSState.INFECTED,0);
+ map.put(SEIRSState.RECOVERED,0);
+ map.put(SEIRSState.SUCEPTIBLE,0);
- for (Agent agent : agents) {
- String state = agent.getState().toString();
+ for (SEIRSAgent SEIRSAgent : agents) {
+ String state = SEIRSAgent.getState().toString();
map.put(state,map.get(state)+1);
}
return map;
}
+
+ @Override
+ public int getSize() {
+ return size;
+ }
}
diff --git a/src/main/java/environment/SquareEnvironment2D.java b/src/main/java/environment/SquareEnvironment2D.java
new file mode 100644
index 0000000000000000000000000000000000000000..308242fb34c10588c4ae7379ddd120d0ecd27d99
--- /dev/null
+++ b/src/main/java/environment/SquareEnvironment2D.java
@@ -0,0 +1,16 @@
+package environment;
+
+public interface SquareEnvironment2D extends Environment2D {
+ int LEFT = 0;
+ int RIGHT = 1;
+ int UP = 2;
+ int DOWN = 3;
+ int CENTER = 4;
+ int UP_LEFT = 5;
+ int UP_RIGHT = 6;
+ int DOWN_LEFT = 7;
+ int DOWN_RIGHT = 8;
+ int MAX_CHUNK = 9;
+
+ int getSize();
+}
diff --git a/src/main/java/models/Parameters.java b/src/main/java/models/Parameters.java
index d97ca635011168624f23d6a0e4c3df3f513a689c..ad96e8a01bd9e147375d574eca811e584f500e35 100644
--- a/src/main/java/models/Parameters.java
+++ b/src/main/java/models/Parameters.java
@@ -1,5 +1,6 @@
package models;
+@SuppressWarnings("unused")
public class Parameters {
private int seed;
diff --git a/src/main/java/scheduler/AsynchronousScheduler.java b/src/main/java/scheduler/AsynchronousScheduler.java
new file mode 100644
index 0000000000000000000000000000000000000000..92f48a720f6e3a9805c0293e02eb42bfd6710889
--- /dev/null
+++ b/src/main/java/scheduler/AsynchronousScheduler.java
@@ -0,0 +1,4 @@
+package scheduler;
+
+public abstract class AsynchronousScheduler implements Scheduler {
+}
diff --git a/src/main/java/sma/scheduler/FairAsynchronousScheduler.java b/src/main/java/scheduler/FairAsynchronousScheduler.java
similarity index 67%
rename from src/main/java/sma/scheduler/FairAsynchronousScheduler.java
rename to src/main/java/scheduler/FairAsynchronousScheduler.java
index ee65acbc40bea22b5b06b7fcc9e59af61b799864..4df02c25151ff6e6f3afef9e03664ee23e7a9308 100644
--- a/src/main/java/sma/scheduler/FairAsynchronousScheduler.java
+++ b/src/main/java/scheduler/FairAsynchronousScheduler.java
@@ -1,7 +1,6 @@
-package sma.scheduler;
+package scheduler;
-import sma.agents.Agent;
-import sma.agents.RandomWalkingAgent;
+import agents.Agent;
import java.util.Arrays;
import java.util.List;
@@ -10,17 +9,19 @@ import java.util.concurrent.*;
import java.util.function.Function;
import java.util.stream.Collectors;
-public class FairAsynchronousScheduler implements Scheduler{
+public class FairAsynchronousScheduler extends AsynchronousScheduler {
- private ExecutorService executor = Executors.newSingleThreadExecutor();
+ private final ExecutorService executor = Executors.newSingleThreadExecutor();
private Queue<Agent> queue;
- public FairAsynchronousScheduler(Agent[] agents) {
+ @Override
+ public void init(Agent[] agents) {
this.queue = new ConcurrentLinkedQueue<>(Arrays.stream(agents).toList());
}
- public void nextCycle() {
- List<Future<Agent>> results = queue.parallelStream().map(agent -> executor.submit(() -> {agent.move(); return agent;})).toList();
+ @Override
+ public void doNextCycle() {
+ List<Future<Agent>> results = queue.parallelStream().map(agent -> executor.submit(() -> {agent.wakeUp(); return agent;})).toList();
Function<Future<Agent>, Agent> futureTreatment = futureAgent -> {
try {
return futureAgent.get();
diff --git a/src/main/java/sma/scheduler/FairSynchronousScheduler.java b/src/main/java/scheduler/FairSynchronousScheduler.java
similarity index 57%
rename from src/main/java/sma/scheduler/FairSynchronousScheduler.java
rename to src/main/java/scheduler/FairSynchronousScheduler.java
index a8fe123d41638cb0bebc617c811da332f2087f11..3c56381efe3b08d063a4c132c91bd194992bb13c 100644
--- a/src/main/java/sma/scheduler/FairSynchronousScheduler.java
+++ b/src/main/java/scheduler/FairSynchronousScheduler.java
@@ -1,19 +1,16 @@
-package sma.scheduler;
+package scheduler;
-import sma.agents.RandomWalkingAgent;
+import agents.Agent;
import java.util.*;
-public class FairSynchronousScheduler implements Scheduler {
+public class FairSynchronousScheduler extends SynchronousScheduler {
- private RandomWalkingAgent[] agents;
+ private Agent[] agents;
private Stack<Integer> executionOrder;
- private Random r;
- public FairSynchronousScheduler(RandomWalkingAgent[] agents, int seed) {
- this.agents = agents;
- r = new Random(seed);
- executionOrder = new Stack<>();
+ public FairSynchronousScheduler(int seed) {
+ super(seed);
}
private void generateExecutionOrder() {
@@ -25,12 +22,19 @@ public class FairSynchronousScheduler implements Scheduler {
private void wakeAgents() {
while (!executionOrder.isEmpty()) {
- agents[(executionOrder.pop())].move();
+ agents[(executionOrder.pop())].wakeUp();
}
}
- public void nextCycle() {
+ @Override
+ public void init(Agent[] agents) {
+ this.agents = agents;
+ executionOrder = new Stack<>();
+ }
+
+ @Override
+ public void doNextCycle() {
generateExecutionOrder();
wakeAgents();
}
diff --git a/src/main/java/scheduler/Scheduler.java b/src/main/java/scheduler/Scheduler.java
new file mode 100644
index 0000000000000000000000000000000000000000..bb2437f7d4ed4c41f50fbfb6b235c5e924f18525
--- /dev/null
+++ b/src/main/java/scheduler/Scheduler.java
@@ -0,0 +1,10 @@
+package scheduler;
+
+import agents.Agent;
+
+public interface Scheduler {
+
+ void init(Agent[] agents);
+ void doNextCycle();
+
+}
diff --git a/src/main/java/scheduler/SynchronousScheduler.java b/src/main/java/scheduler/SynchronousScheduler.java
new file mode 100644
index 0000000000000000000000000000000000000000..e8fb3174f07900f152806e39bfee3474765550d1
--- /dev/null
+++ b/src/main/java/scheduler/SynchronousScheduler.java
@@ -0,0 +1,12 @@
+package scheduler;
+
+import java.util.Random;
+
+public abstract class SynchronousScheduler implements Scheduler {
+
+ protected final Random r;
+
+ public SynchronousScheduler(int seed) {
+ r = new Random(seed);
+ }
+}
diff --git a/src/main/java/sma/SEIRS_SMA.java b/src/main/java/sma/SEIRS_SMA.java
new file mode 100644
index 0000000000000000000000000000000000000000..6125e9dd4777ba2aa0b6036d2546ebe3fe5068b4
--- /dev/null
+++ b/src/main/java/sma/SEIRS_SMA.java
@@ -0,0 +1,109 @@
+package sma;
+
+import agents.Agent;
+import environment.Environment;
+import models.Parameters;
+import agents.RandomWalkingAgent;
+import environment.SEIRSEnvironment;
+import scheduler.Scheduler;
+import utils.StatsRecorder;
+import utils.YamlReader;
+import view.DisplaySquaredEnvironment;
+import view.FrameBuilder;
+import view.StatisticsCanvas;
+
+import java.io.IOException;
+import java.time.Duration;
+import java.time.Instant;
+import java.util.Date;
+import java.util.HashMap;
+
+@SuppressWarnings("InfiniteLoopStatement")
+public class SEIRS_SMA implements SMA{
+
+ private final Parameters parameters;
+ private RandomWalkingAgent[] agents;
+ private SEIRSEnvironment environment;
+ private Scheduler scheduler;
+ private StatisticsCanvas statisticsCanvas;
+ private DisplaySquaredEnvironment display;
+
+ private HashMap<String,Integer> stats;
+
+ public SEIRS_SMA() {
+ parameters = YamlReader.getParams();
+ agents = new RandomWalkingAgent[parameters.getPopulation()];
+ }
+
+ private void initGraphics() {
+ statisticsCanvas = new StatisticsCanvas(500,500);
+ display = new DisplaySquaredEnvironment(environment,agents);
+ FrameBuilder frameBuilder = new FrameBuilder();
+
+ frameBuilder.addComponent(display,FrameBuilder.TOP);
+ frameBuilder.addComponent(statisticsCanvas,FrameBuilder.RIGHT);
+ frameBuilder.buildWindow();
+ statisticsCanvas.updateValues(environment.getAgentStatus());
+ statisticsCanvas.repaint();
+ }
+
+ private void updateGraphics(){
+ display.repaint();
+ statisticsCanvas.updateValues(stats);
+ statisticsCanvas.repaint();
+ }
+
+ private void doNextCycle(){
+ scheduler.doNextCycle();
+ stats = environment.getAgentStatus();
+ try{
+ StatsRecorder.writeToCSV(stats,"src/main/resources/output.csv");
+ } catch (IOException e) {
+ e.printStackTrace();
+ System.exit(1);
+ }
+ if (parameters.isGraphicalMode()) {
+ updateGraphics();
+ }
+ if (parameters.getTimeBetweenCycles() > 0) {
+ try {
+ Thread.sleep(parameters.getTimeBetweenCycles());
+ } catch (InterruptedException e) {
+ e.printStackTrace();
+ }
+ }
+ }
+
+ @Override
+ public void init(Environment environment, Scheduler scheduler, Agent[] agents) {
+ this.agents = (RandomWalkingAgent[]) agents;
+ this.scheduler = scheduler;
+ scheduler.init(agents);
+ this.environment = (SEIRSEnvironment)environment;
+ this.environment.initiateChunks();
+ initGraphics();
+ }
+
+
+ @Override
+ public void run() {
+ Instant startTime = Instant.now();
+ System.out.println("Starting simulation at : "+ Date.from(startTime));
+ if (parameters.getNbOfCycles() <0) {
+ while (true) {
+ doNextCycle();
+ }
+ } else {
+ int cpt = 0;
+ while (cpt < parameters.getNbOfCycles()) {
+ doNextCycle();
+ cpt++;
+ }
+ Instant endTime = Instant.now();
+ System.out.println("Simulation done !");
+ Duration duration = Duration.between(startTime,endTime);
+ System.out.println("Elapsed time : " + duration.toHoursPart() + " hours, " + duration.toMinutesPart() + " minutes, " + duration.toSecondsPart() + "seconds.");
+ System.exit(0);
+ }
+ }
+}
diff --git a/src/main/java/sma/SMA.java b/src/main/java/sma/SMA.java
index 210768b8f06954aba68a7be9010cf06acf85b79b..1d40aab645afd0d85a4a50a86a4ae85f9334e880 100644
--- a/src/main/java/sma/SMA.java
+++ b/src/main/java/sma/SMA.java
@@ -1,137 +1,11 @@
package sma;
-import models.Parameters;
-import sma.agents.RandomWalkingAgent;
-import sma.agents.states.InfectedState;
-import sma.environment.SquaredChunksEnvironment;
-import sma.scheduler.FairAsynchronousScheduler;
-import sma.scheduler.FairSynchronousScheduler;
-import sma.scheduler.Scheduler;
-import utils.StatsRecorder;
-import utils.YamlReader;
-import view.DisplaySquaredEnvironment;
-import view.FrameBuilder;
-import view.StatisticsCanvas;
+import agents.Agent;
+import environment.Environment;
+import scheduler.Scheduler;
-import java.awt.*;
-import java.io.IOException;
-import java.sql.SQLOutput;
-import java.time.Duration;
-import java.time.Instant;
-import java.time.temporal.ChronoUnit;
-import java.util.Date;
-import java.util.HashMap;
-import java.util.Random;
-
-public class SMA {
-
- private Parameters parameters;
- private Random r;
- private RandomWalkingAgent[] agents;
- private SquaredChunksEnvironment environment;
- private Scheduler scheduler;
- private StatisticsCanvas statisticsCanvas;
- private DisplaySquaredEnvironment display;
-
- private HashMap<String,Integer> stats;
-
- private FrameBuilder frameBuilder;
-
- public SMA() {
- parameters = YamlReader.getParams();
- r = new Random(parameters.getSeed());
- agents = new RandomWalkingAgent[parameters.getPopulation()];
- }
-
- private void populateEnvironment() {
- for (int i = 0; i<parameters.getPopulation();i++) {
- Point position = new Point(r.nextInt(parameters.getSize()),r.nextInt(parameters.getSize()));
- RandomWalkingAgent agent = new RandomWalkingAgent(position,parameters.getSeed()+i,environment);
- agents[i] = agent;
- }
- }
-
- private void infectPatientZero() {
- for (int i=0 ; i< parameters.getNbOfPatientZero(); i++) {
- var agent = agents[(r.nextInt(parameters.getPopulation()))];
- agent.changeState(new InfectedState(agent));
- }
- }
-
- private void initScheduler() {
- if (parameters.isSynchronousMode()) {
- scheduler = new FairSynchronousScheduler(agents, parameters.getSeed());
- } else {
- scheduler = new FairAsynchronousScheduler(agents);
- }
- }
-
- public void init() {
- environment = new SquaredChunksEnvironment(parameters.getSize(),agents);
- populateEnvironment();
- environment.initiateChunks();
- infectPatientZero();
- initScheduler();
- if (parameters.isGraphicalMode()) {
- initGraphics();
- }
- }
-
- private void initGraphics() {
- statisticsCanvas = new StatisticsCanvas(500,500);
- display = new DisplaySquaredEnvironment(environment,agents);
- frameBuilder = new FrameBuilder();
-
- frameBuilder.addComponent(display,FrameBuilder.TOP);
- frameBuilder.addComponent(statisticsCanvas,FrameBuilder.RIGHT);
- frameBuilder.buildWindow();
- statisticsCanvas.updateValues(environment.getAgentStatus());
- statisticsCanvas.repaint();
- }
-
- private void updateGraphics(){
- display.repaint();
- statisticsCanvas.updateValues(stats);
- statisticsCanvas.repaint();
- }
-
- private void doNextCycle() throws IOException, InterruptedException {
- scheduler.nextCycle();
- stats = environment.getAgentStatus();
- StatsRecorder.writeToCSV(stats,"src/main/resources/output.csv");
- if (parameters.isGraphicalMode()) {
- updateGraphics();
- }
- if (parameters.getTimeBetweenCycles() > 0) {
- Thread.sleep(parameters.getTimeBetweenCycles());
- }
- }
-
- public void run() throws IOException, InterruptedException {
- Instant startTime = Instant.now();
- System.out.println("Starting simulation at : "+ Date.from(startTime));
- if (parameters.getNbOfCycles() <0) {
- while (true) {
- doNextCycle();
- }
- } else {
- int cpt = 0;
- while (cpt < parameters.getNbOfCycles()) {
- doNextCycle();
- cpt++;
- }
- Instant endTime = Instant.now();
- System.out.println("Simulation done !");
- Duration duration = Duration.between(startTime,endTime);
- System.out.println("Elapsed time : " + duration.toHoursPart() + " hours, " + duration.toMinutesPart() + " minutes, " + duration.toSecondsPart() + "seconds.");
- System.exit(0);
- }
- }
-
- public static void main(String[] args) throws InterruptedException, IOException {
- SMA sma = new SMA();
- sma.init();
- sma.run();
- }
+public interface SMA{
+ void init(Environment environment, Scheduler scheduler, Agent[] agents);
+ void run();
}
diff --git a/src/main/java/sma/agents/Agent.java b/src/main/java/sma/agents/Agent.java
deleted file mode 100644
index 8584df1e5dbfb5811f4f9faeb77db345357c24cb..0000000000000000000000000000000000000000
--- a/src/main/java/sma/agents/Agent.java
+++ /dev/null
@@ -1,17 +0,0 @@
-package sma.agents;
-
-import sma.agents.states.State;
-
-import java.awt.*;
-
-public interface Agent {
-
- void changeState(State state);
- State getState();
- boolean isExposed();
- boolean isInfected();
- boolean isRecovered();
- boolean hasLostImmunity();
- void move();
- Point getPosition();
-}
diff --git a/src/main/java/sma/agents/RandomWalkingAgent.java b/src/main/java/sma/agents/RandomWalkingAgent.java
deleted file mode 100644
index 0921be307026021d173b3ba38b0f683fb5ac4d5c..0000000000000000000000000000000000000000
--- a/src/main/java/sma/agents/RandomWalkingAgent.java
+++ /dev/null
@@ -1,96 +0,0 @@
-package sma.agents;
-
-import sma.agents.states.InfectedState;
-import sma.agents.states.State;
-import sma.agents.states.SuceptibleState;
-import sma.environment.Environment;
-import sma.environment.SquaredChunksEnvironment;
-import utils.YamlReader;
-
-import java.awt.Point;
-import java.util.Random;
-
-public class RandomWalkingAgent implements Agent {
-
- private Point position;
- private Random r;
- private SquaredChunksEnvironment environment;
- private State state;
-
- public RandomWalkingAgent(Point position, int seed, SquaredChunksEnvironment environment) {
- this.position = position;
- this.state = new SuceptibleState(this);
- this.environment = environment;
- this.r = new Random(seed);
- }
-
- public void move() {
- state.onMovement();
- int move = r.nextInt(4);
- Point newPosition = switch (move) {
- case Environment.LEFT -> new Point(position.x-environment.RADIUS,position.y);
- case Environment.RIGHT -> new Point(position.x+environment.RADIUS,position.y);
- case Environment.UP -> new Point(position.x,position.y-environment.RADIUS);
- case Environment.DOWN -> new Point(position.x,position.y+environment.RADIUS);
- default -> throw new IllegalStateException("Unexpected value: " + move);
- };
- if (newPosition.x <= environment.size-1 && newPosition.x >= 0 && newPosition.y <= environment.size-1 && newPosition.y >=0 ) {
- environment.notifyNewPosition(position,newPosition,this);
- position = newPosition;
- }
- }
-
- @Override
- public void changeState(State state) { this.state = state; }
-
- @Override
- public boolean isExposed() {
- boolean isExposed = false;
- for (Agent neighbor: environment.getNeighbors(position)) {
- if (neighbor.getState() instanceof InfectedState) {
- int roll = r.nextInt(100)+1;
- if (roll <= YamlReader.getParams().getInfectionRate()*100) {
- isExposed = true;
- }
- }
- }
- return isExposed;
- }
-
- @Override
- public boolean isInfected() {
- boolean isSick = false;
- int roll = r.nextInt(100)+1;
- if (roll <= YamlReader.getParams().getIncubationRate()*100) {
- isSick = true;
- }
- return isSick;
- }
-
- @Override
- public boolean isRecovered() {
- boolean isHealed = false;
- int roll = r.nextInt(100)+1;
- if (roll <= YamlReader.getParams().getRecoveryRate()*100) {
- isHealed = true;
- }
- return isHealed;
- }
-
- @Override
- public boolean hasLostImmunity() {
- boolean hasLostImmunity = false;
- int roll = r.nextInt(100)+1;
- if (roll <= YamlReader.getParams().getLooseImmunityRate()*100) {
- hasLostImmunity = true;
- }
- return hasLostImmunity;
- }
-
- @Override
- public State getState() { return this.state; }
-
- @Override
- public Point getPosition() { return position; }
-
-}
diff --git a/src/main/java/sma/agents/states/ExposedState.java b/src/main/java/sma/agents/states/ExposedState.java
deleted file mode 100644
index ec0b3eb90cd676ed8db1d9382fe45dfdbcadc767..0000000000000000000000000000000000000000
--- a/src/main/java/sma/agents/states/ExposedState.java
+++ /dev/null
@@ -1,22 +0,0 @@
-package sma.agents.states;
-
-import sma.agents.Agent;
-
-public class ExposedState extends State{
-
- public ExposedState(Agent agent) {
- super(agent);
- }
-
- @Override
- public void onMovement() {
- if (agent.isInfected()) {
- agent.changeState(new InfectedState(agent));
- }
- }
-
- @Override
- public String toString() {
- return EXPOSED;
- }
-}
diff --git a/src/main/java/sma/agents/states/InfectedState.java b/src/main/java/sma/agents/states/InfectedState.java
deleted file mode 100644
index eef377fb1e58254691bbe2c16fa68b3c1bbd1e51..0000000000000000000000000000000000000000
--- a/src/main/java/sma/agents/states/InfectedState.java
+++ /dev/null
@@ -1,22 +0,0 @@
-package sma.agents.states;
-
-import sma.agents.Agent;
-
-public class InfectedState extends State{
-
- public InfectedState(Agent agent) {
- super(agent);
- }
-
- @Override
- public void onMovement() {
- if (agent.isRecovered()) {
- agent.changeState(new RecoveredState(agent));
- }
- }
-
- @Override
- public String toString() {
- return INFECTED;
- }
-}
diff --git a/src/main/java/sma/agents/states/RecoveredState.java b/src/main/java/sma/agents/states/RecoveredState.java
deleted file mode 100644
index fdc0ad5ec719962de4e6509b6f5be117e54a665d..0000000000000000000000000000000000000000
--- a/src/main/java/sma/agents/states/RecoveredState.java
+++ /dev/null
@@ -1,22 +0,0 @@
-package sma.agents.states;
-
-import sma.agents.Agent;
-
-public class RecoveredState extends State{
-
- public RecoveredState(Agent agent) {
- super(agent);
- }
-
- @Override
- public void onMovement() {
- if (agent.hasLostImmunity()) {
- agent.changeState(new SuceptibleState(agent));
- }
- }
-
- @Override
- public String toString() {
- return RECOVERED;
- }
-}
diff --git a/src/main/java/sma/agents/states/SuceptibleState.java b/src/main/java/sma/agents/states/SuceptibleState.java
deleted file mode 100644
index 3e4d3b3e4a5526deb244764b1bc1f15c4f1ee8ba..0000000000000000000000000000000000000000
--- a/src/main/java/sma/agents/states/SuceptibleState.java
+++ /dev/null
@@ -1,24 +0,0 @@
-package sma.agents.states;
-
-import sma.agents.Agent;
-
-import java.awt.*;
-
-public class SuceptibleState extends State{
-
- public SuceptibleState(Agent agent) {
- super(agent);
- }
-
- @Override
- public void onMovement() {
- if (agent.isExposed()) {
- agent.changeState(new ExposedState(agent));
- }
- }
-
- @Override
- public String toString() {
- return SUCEPTIBLE;
- }
-}
diff --git a/src/main/java/sma/environment/Environment.java b/src/main/java/sma/environment/Environment.java
deleted file mode 100644
index 0172070eb1bc32b280c57188b25fe54435b3476d..0000000000000000000000000000000000000000
--- a/src/main/java/sma/environment/Environment.java
+++ /dev/null
@@ -1,24 +0,0 @@
-package sma.environment;
-
-import sma.agents.Agent;
-
-import java.awt.Point;
-import java.util.HashMap;
-import java.util.List;
-
-public interface Environment {
- int LEFT = 0;
- int RIGHT = 1;
- int UP = 2;
- int DOWN = 3;
- int CENTER = 4;
- int UP_LEFT = 5;
- int UP_RIGHT = 6;
- int DOWN_LEFT = 7;
- int DOWN_RIGHT = 8;
- int MAX_CHUNK = 9;
-
- List<Agent> getNeighbors(Point position);
- void notifyNewPosition(Point oldPosition, Point newPosition, Agent agent);
- HashMap<String,Integer> getAgentStatus();
-}
diff --git a/src/main/java/sma/scheduler/Scheduler.java b/src/main/java/sma/scheduler/Scheduler.java
deleted file mode 100644
index b891c69233d83cf6473030f5f7377760862870cd..0000000000000000000000000000000000000000
--- a/src/main/java/sma/scheduler/Scheduler.java
+++ /dev/null
@@ -1,6 +0,0 @@
-package sma.scheduler;
-
-public interface Scheduler {
-
- void nextCycle();
-}
diff --git a/src/main/java/utils/Pair.java b/src/main/java/utils/Pair.java
index 2d902c76b6df9e1013a3f404d103d4187c1c396c..f204cf8de8fbcbb28aeb8eb0586361a43ca36864 100644
--- a/src/main/java/utils/Pair.java
+++ b/src/main/java/utils/Pair.java
@@ -1,15 +1,6 @@
package utils;
-public class Pair<A,B> {
-
- private A first;
- private B second;
-
- public Pair(A first, B second) {
- super();
- this.first = first;
- this.second = second;
- }
+public record Pair<A, B>(A first, B second) {
public int hashCode() {
int hashFirst = first != null ? first.hashCode() : 0;
@@ -19,22 +10,20 @@ public class Pair<A,B> {
}
public boolean equals(Object other) {
- if (other instanceof Pair) {
- Pair otherPair = (Pair) other;
+ if (other instanceof Pair otherPair) {
return
- (( this.first == otherPair.first ||
- ( this.first != null && otherPair.first != null &&
+ ((this.first == otherPair.first ||
+ (this.first != null && otherPair.first != null &&
this.first.equals(otherPair.first))) &&
- ( this.second == otherPair.second ||
- ( this.second != null && otherPair.second != null &&
- this.second.equals(otherPair.second))) );
+ (this.second == otherPair.second ||
+ (this.second != null && otherPair.second != null &&
+ this.second.equals(otherPair.second))));
}
return false;
}
- public String toString()
- {
+ public String toString() {
return "(" + first + ", " + second + ")";
}
@@ -42,15 +31,7 @@ public class Pair<A,B> {
return first;
}
- public void setFirst(A first) {
- this.first = first;
- }
-
public B getSecond() {
return second;
}
-
- public void setSecond(B second) {
- this.second = second;
- }
}
diff --git a/src/main/java/utils/StatsRecorder.java b/src/main/java/utils/StatsRecorder.java
index 616915a8de09b4a82aff1dbec1933fe4e8135b63..be4fe72f1356c08475db739a24d8d65546c1d816 100644
--- a/src/main/java/utils/StatsRecorder.java
+++ b/src/main/java/utils/StatsRecorder.java
@@ -4,11 +4,13 @@ import java.io.*;
import java.security.InvalidParameterException;
import java.util.HashMap;
import java.util.List;
+import java.util.Objects;
public class StatsRecorder {
private static int nbOfCycles = 0;
+ @SuppressWarnings("ResultOfMethodCallIgnored")
public static void writeToCSV(HashMap<String,Integer> data, String outputFile) throws IOException {
if (!outputFile.endsWith(".csv")) {
@@ -29,24 +31,24 @@ public class StatsRecorder {
List<String> keys = data.keySet().stream().toList();
if (nbOfCycles == 0) {
bw.flush();
- String str = "";
+ StringBuilder str = new StringBuilder();
for (int i = 0; i < keys.size(); i++) {
- str+=keys.get(i);
+ str.append(keys.get(i));
if (i != keys.size()-1){
- str+=",";
+ str.append(",");
}
}
- bw.append(str+'\n');
+ bw.append(str.toString()).append(String.valueOf('\n'));
}
- String line = "";
+ StringBuilder line = new StringBuilder();
for (String title : keys) {
- line += data.get(title);
- if (title != keys.get(keys.size()-1)) {
- line+=",";
+ line.append(data.get(title));
+ if (!Objects.equals(title, keys.get(keys.size() - 1))) {
+ line.append(",");
}
}
- bw.append(line+'\n');
+ bw.append(line.toString()).append(String.valueOf('\n'));
bw.close();
nbOfCycles++;
}
diff --git a/src/main/java/utils/YamlReader.java b/src/main/java/utils/YamlReader.java
index 584434c4c85be68aae5bc8f3396d03ba1e2a44fd..7a55f6dfa739c311814d643e8be00e446d094aca 100644
--- a/src/main/java/utils/YamlReader.java
+++ b/src/main/java/utils/YamlReader.java
@@ -8,8 +8,7 @@ import java.io.File;
public class YamlReader {
- private static ClassLoader classLoader = Thread.currentThread().getContextClassLoader();
- private static ObjectMapper om = new ObjectMapper(new YAMLFactory());
+ private static final ObjectMapper om = new ObjectMapper(new YAMLFactory());
private static Parameters parameters;
public static final String FILE_PATH = "src/main/resources/parameters.yaml";
diff --git a/src/main/java/view/DisplaySquaredEnvironment.java b/src/main/java/view/DisplaySquaredEnvironment.java
index 20fc6589a1c1c3ae2f4569bf9018c15eeee08c24..45f0d12a2e7bd15fac73edd5fcd70cfae060b4fe 100644
--- a/src/main/java/view/DisplaySquaredEnvironment.java
+++ b/src/main/java/view/DisplaySquaredEnvironment.java
@@ -1,8 +1,8 @@
package view;
-import sma.agents.Agent;
-import sma.agents.states.*;
-import sma.environment.SquaredChunksEnvironment;
+import agents.SEIRSAgent;
+import agents.states.SEIRSState;
+import environment.SEIRSEnvironment;
import javax.swing.*;
import java.awt.*;
@@ -10,49 +10,40 @@ import java.awt.*;
public class DisplaySquaredEnvironment extends JPanel {
- private int windowWidth;
- private int windowHeight;
+ private final SEIRSAgent[] SEIRSAgents;
- private Agent[] agents;
-
- private SquaredChunksEnvironment environment;
-
- public DisplaySquaredEnvironment(SquaredChunksEnvironment environment, Agent[] agents) {
- this.environment = environment;
+ public DisplaySquaredEnvironment(SEIRSEnvironment environment, SEIRSAgent[] SEIRSAgents) {
this.setDoubleBuffered(true);
- this.windowWidth = environment.size;
- this.windowHeight = environment.size;
- this.agents = agents;
- setSize(windowWidth,windowHeight);
+ this.SEIRSAgents = SEIRSAgents;
+ setSize(environment.size,environment.size);
setVisible(true);
}
- private void drawCenteredCircle(Graphics g, int x, int y, int r) {
- x = x-(r/2);
- y = y-(r/2);
- g.fillOval(x,y,r,r);
+ private void drawCenteredCircle(Graphics g, int x, int y) {
+ x = x-(SEIRSEnvironment.RADIUS /2);
+ y = y-(SEIRSEnvironment.RADIUS /2);
+ g.fillOval(x,y, SEIRSEnvironment.RADIUS, SEIRSEnvironment.RADIUS);
}
@Override
public void paint(Graphics g) {
super.paint(g);
- for (int i = 0; i < agents.length; i++) {
- var agent = agents[i];
- if (agent != null) {
- colorAgent(g,agent);
- drawCenteredCircle(g,agent.getPosition().x,agent.getPosition().y,environment.RADIUS);
+ for (SEIRSAgent SEIRSAgent : SEIRSAgents) {
+ if (SEIRSAgent != null) {
+ colorAgent(g, SEIRSAgent);
+ drawCenteredCircle(g, SEIRSAgent.getPosition().x, SEIRSAgent.getPosition().y);
}
}
}
- private void colorAgent(Graphics g, Agent a) {
+ private void colorAgent(Graphics g, SEIRSAgent a) {
var state = a.getState();
switch (state.toString()) {
- case State.SUCEPTIBLE-> g.setColor(Color.GRAY);
- case State.EXPOSED -> g.setColor(Color.YELLOW);
- case State.INFECTED -> g.setColor(Color.RED);
- case State.RECOVERED -> g.setColor(Color.GREEN);
+ case SEIRSState.SUCEPTIBLE-> g.setColor(Color.GRAY);
+ case SEIRSState.EXPOSED -> g.setColor(Color.YELLOW);
+ case SEIRSState.INFECTED -> g.setColor(Color.RED);
+ case SEIRSState.RECOVERED -> g.setColor(Color.GREEN);
}
}
}
diff --git a/src/main/java/view/FrameBuilder.java b/src/main/java/view/FrameBuilder.java
index 0f25ddbd16fed51ae87c039f2aaeee978dcd6540..e2ee26674535c1df2308203facc3306ad36e180a 100644
--- a/src/main/java/view/FrameBuilder.java
+++ b/src/main/java/view/FrameBuilder.java
@@ -47,7 +47,7 @@ public class FrameBuilder {
components.add(pair);
}
- public JFrame buildWindow() {
+ public void buildWindow() {
JFrame frame = new JFrame();
frame.setLayout(new java.awt.GridLayout());
frame.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
@@ -64,6 +64,5 @@ public class FrameBuilder {
frame.setSize(windowWidth,windowHeight);
frame.setResizable(false);
frame.setVisible(true);
- return frame;
}
}
diff --git a/src/main/java/view/StatisticsCanvas.java b/src/main/java/view/StatisticsCanvas.java
index aeef20de31ccb079831eced21b00a4fd0e15fd3c..78a8ee0c8b7fb03668e9bb8d95a2705d46d90565 100644
--- a/src/main/java/view/StatisticsCanvas.java
+++ b/src/main/java/view/StatisticsCanvas.java
@@ -1,6 +1,6 @@
package view;
-import sma.agents.states.State;
+import agents.states.SEIRSState;
import utils.YamlReader;
import javax.swing.*;
@@ -9,10 +9,10 @@ import java.util.HashMap;
public class StatisticsCanvas extends JPanel {
- private int canvasWidth;
- private int canvasHeight;
+ private final int canvasWidth;
+ private final int canvasHeight;
private HashMap<String,Integer> values;
- private int total;
+ private final int total;
public StatisticsCanvas(int width,int height) {
this.setDoubleBuffered(false);
@@ -26,10 +26,10 @@ public class StatisticsCanvas extends JPanel {
private Color stringToColor(String str) {
return switch (str){
- case State.EXPOSED -> Color.YELLOW;
- case State.SUCEPTIBLE -> Color.GRAY;
- case State.INFECTED -> Color.RED;
- case State.RECOVERED -> Color.GREEN;
+ case SEIRSState.EXPOSED -> Color.YELLOW;
+ case SEIRSState.SUCEPTIBLE -> Color.GRAY;
+ case SEIRSState.INFECTED -> Color.RED;
+ case SEIRSState.RECOVERED -> Color.GREEN;
default -> throw new IllegalStateException("Illegal state : "+str);
};
}
diff --git a/src/main/resources/META-INF/MANIFEST.MF b/src/main/resources/META-INF/MANIFEST.MF
index 64987c2350fb64fa75cdcbb3384f84d9dd85ab95..7c66a6f1069b1b4909a549b63d57a4fcf9882b9c 100644
--- a/src/main/resources/META-INF/MANIFEST.MF
+++ b/src/main/resources/META-INF/MANIFEST.MF
@@ -2,4 +2,4 @@ Manifest-Version: 1.0
Class-Path: jackson-core-2.13.2.jar snakeyaml-1.30.jar jackson-dataforma
t-yaml-2.13.2.jar jackson-annotations-2.13.2.jar jackson-databind-2.13.
2.2.jar
-Main-Class: sma.SMA
+Main-Class: RunExperiment
diff --git a/src/main/resources/output.png b/src/main/resources/output.png
new file mode 100644
index 0000000000000000000000000000000000000000..26f0e188e8b42f7e5058e9e7730231d057497782
Binary files /dev/null and b/src/main/resources/output.png differ
diff --git a/src/main/resources/parameters.yaml b/src/main/resources/parameters.yaml
index d1bb7409f96ecc1192fee3aaa793e69404728d04..3ddf6aed6d973b2ca91423d04dcbd18c69932fb9 100644
--- a/src/main/resources/parameters.yaml
+++ b/src/main/resources/parameters.yaml
@@ -1,12 +1,12 @@
-seed : 120
-population : 1000 #number of agents
-size : 500 #size of the world in pixels
-nbOfPatientZero : 1
-infectionRate : 0.3 #chance that an infected agent will spread to a susceptible agent
-incubationRate : 0.1 #chance that an exposed agent become infected each cycle
-recoveryRate : 0.3 #chance that an infected agent become recovered each cycle
-looseImmunityRate : 0.05 #chance that a recovered agent become suceptible again
-nbOfCycles : 10000 #if the number is negative, will run endlessly
-timeBetweenCycles : 0 #in milliseconds, 0 or lower will run cycles as fast as possible
-synchronousMode : false #if true, will wake synchronously the agents in a pseudo-random order based on the given seed otherwise will wake up the agents asynchronously
-graphicalMode : false #if false, will run without graphical interface
\ No newline at end of file
+graphicalMode: true
+incubationRate: 0.3
+infectionRate: 0.035
+looseImmunityRate: 0.09
+recoveryRate: 0.6
+nbOfCycles: 2000
+nbOfPatientZero: 10
+population: 5000
+seed: 120
+size: 500
+synchronousMode: false
+timeBetweenCycles: 0
diff --git a/src/main/resources/pythonOutput/.getkeep b/src/main/resources/pythonOutput/.getkeep
new file mode 100644
index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391
diff --git a/target/classes/META-INF/MANIFEST.MF b/target/classes/META-INF/MANIFEST.MF
index 64987c2350fb64fa75cdcbb3384f84d9dd85ab95..7c66a6f1069b1b4909a549b63d57a4fcf9882b9c 100644
--- a/target/classes/META-INF/MANIFEST.MF
+++ b/target/classes/META-INF/MANIFEST.MF
@@ -2,4 +2,4 @@ Manifest-Version: 1.0
Class-Path: jackson-core-2.13.2.jar snakeyaml-1.30.jar jackson-dataforma
t-yaml-2.13.2.jar jackson-annotations-2.13.2.jar jackson-databind-2.13.
2.2.jar
-Main-Class: sma.SMA
+Main-Class: RunExperiment
diff --git a/target/classes/output.csv b/target/classes/output.csv
index 490f0ab2859274974646b297e46a09ffbe237d83..1c377d16c4dabd632950f7f9cef693f34698f071 100644
--- a/target/classes/output.csv
+++ b/target/classes/output.csv
@@ -1,10001 +1,209 @@
SUCEPTIBLE,EXPOSED,RECOVERED,INFECTED
-996,3,1,0
-997,3,0,0
-997,3,0,0
-995,4,0,1
-994,5,0,1
-994,5,1,0
-994,4,1,1
-991,6,1,2
-989,8,2,1
-986,10,3,1
-983,12,3,2
-981,14,3,2
-978,16,3,3
-973,20,4,3
-973,21,3,3
-967,25,5,3
-963,25,6,6
-961,23,8,8
-956,23,12,9
-954,22,15,9
-949,25,16,10
-949,24,14,13
-946,28,16,10
-940,36,17,7
-934,39,18,9
-929,40,23,8
-927,40,24,9
-919,43,22,16
-913,44,25,18
-907,46,30,17
-903,50,34,13
-901,45,34,20
-888,53,38,21
-888,52,41,19
-876,62,48,14
-872,64,50,14
-865,60,52,23
-859,65,57,19
-853,67,55,25
-846,71,59,24
-847,70,60,23
-837,73,68,22
-835,72,70,23
-838,69,73,20
-836,70,73,21
-833,66,77,24
-828,64,83,25
-823,69,88,20
-823,64,92,21
-822,58,95,25
-819,60,97,24
-815,64,98,23
-816,63,104,17
-816,70,99,15
-813,71,103,13
-813,71,96,20
-814,67,100,19
-812,65,107,16
-807,70,109,14
-811,62,112,15
-805,62,116,17
-798,71,121,10
-798,75,117,10
-797,66,114,23
-788,69,114,29
-781,75,115,29
-769,86,117,28
-763,87,118,32
-758,85,123,34
-755,85,120,40
-746,89,131,34
-741,95,133,31
-740,92,143,25
-735,89,148,28
-733,90,153,24
-733,92,149,26
-729,94,147,30
-726,97,149,28
-717,96,158,29
-708,101,163,28
-713,99,161,27
-707,101,162,30
-701,96,166,37
-692,109,164,35
-688,111,166,35
-680,116,165,39
-675,123,166,36
-670,132,170,28
-669,126,173,32
-665,123,172,40
-661,128,176,35
-658,126,180,36
-655,128,181,36
-650,127,185,38
-645,131,185,39
-645,134,183,38
-643,134,181,42
-639,140,184,37
-630,145,185,40
-631,140,187,42
-628,139,200,33
-631,141,199,29
-628,136,197,39
-628,130,195,47
-621,134,203,42
-621,138,201,40
-610,136,214,40
-606,140,215,39
-596,143,223,38
-594,140,226,40
-581,148,223,48
-578,153,228,41
-578,155,224,43
-573,155,226,46
-574,159,222,45
-572,152,224,52
-562,152,232,54
-558,153,243,46
-554,153,248,45
-558,148,243,51
-560,147,245,48
-554,151,240,55
-544,153,243,60
-524,169,249,58
-522,164,254,60
-515,161,256,68
-511,163,264,62
-501,178,269,52
-492,175,268,65
-494,169,272,65
-486,164,276,74
-468,174,287,71
-457,185,299,59
-458,181,298,63
-451,177,305,67
-450,174,315,61
-448,170,321,61
-457,169,317,57
-458,162,316,64
-448,170,327,55
-445,171,332,52
-455,165,323,57
-453,175,315,57
-446,181,314,59
-441,186,324,49
-441,179,319,61
-422,192,333,53
-417,193,338,52
-415,201,334,50
-419,193,333,55
-415,199,332,54
-404,203,338,55
-410,197,337,56
-401,204,329,66
-401,204,335,60
-402,203,333,62
-383,218,344,55
-382,218,341,59
-378,215,339,68
-379,209,336,76
-363,218,335,84
-361,215,344,80
-348,221,350,81
-338,218,356,88
-353,209,359,79
-345,212,360,83
-354,200,367,79
-354,196,368,82
-353,207,373,67
-344,214,382,60
-348,211,370,71
-335,221,369,75
-326,225,377,72
-318,229,376,77
-316,231,363,90
-308,230,377,85
-306,228,378,88
-296,223,391,90
-289,233,399,79
-299,233,399,69
-295,239,396,70
-289,253,393,65
-294,244,391,71
-291,243,395,71
-285,242,393,80
-289,239,393,79
-290,240,391,79
-290,234,393,83
-290,231,400,79
-284,234,401,81
-286,225,407,82
-284,222,413,81
-282,225,419,74
-285,220,420,75
-284,226,422,68
-277,227,427,69
-282,225,425,68
-281,223,432,64
-286,209,434,71
-299,208,424,69
-292,210,437,61
-287,219,436,58
-293,221,435,51
-303,210,437,50
-300,212,429,59
-316,208,414,62
-319,202,413,66
-325,192,413,70
-311,213,411,65
-310,214,417,59
-313,209,415,63
-319,200,416,65
-313,197,423,67
-328,192,421,59
-332,192,416,60
-333,195,407,65
-331,197,408,64
-328,197,417,58
-327,200,415,58
-329,198,406,67
-325,193,414,68
-318,202,417,63
-327,194,416,63
-332,186,419,63
-335,189,417,59
-333,202,409,56
-344,194,399,63
-335,208,391,66
-346,207,380,67
-345,207,367,81
-339,207,375,79
-339,202,379,80
-336,194,386,84
-333,201,389,77
-325,206,400,69
-315,202,400,83
-316,201,406,77
-314,200,411,75
-316,199,407,78
-314,200,413,73
-318,200,410,72
-308,204,410,78
-313,190,415,82
-313,195,414,78
-303,212,415,70
-298,211,423,68
-298,208,426,68
-302,205,423,70
-300,208,431,61
-302,203,428,67
-297,198,437,68
-308,193,430,69
-319,186,430,65
-316,188,415,81
-304,196,421,79
-306,202,430,62
-316,204,419,61
-314,204,414,68
-314,206,414,66
-310,211,413,66
-317,216,410,57
-328,215,402,55
-336,213,398,53
-343,200,391,66
-346,198,383,73
-348,206,380,66
-351,215,371,63
-344,201,381,74
-330,209,380,81
-324,215,380,81
-312,224,383,81
-304,220,389,87
-301,220,394,85
-302,221,386,91
-305,221,385,89
-302,224,394,80
-304,218,393,85
-305,222,397,76
-307,213,399,81
-302,213,405,80
-298,210,407,85
-288,217,410,85
-281,223,403,93
-275,219,412,94
-280,210,421,89
-279,211,423,87
-272,218,428,82
-263,221,429,87
-267,218,433,82
-260,224,433,83
-267,226,429,78
-278,212,423,87
-271,216,431,82
-264,226,441,69
-269,224,441,66
-271,219,448,62
-273,203,453,71
-279,208,447,66
-268,211,455,66
-271,208,456,65
-272,208,450,70
-276,207,450,67
-280,207,442,71
-290,209,445,56
-307,206,426,61
-311,208,418,63
-304,212,417,67
-310,205,410,75
-320,212,398,70
-312,218,401,69
-311,213,400,76
-311,199,398,92
-298,197,416,89
-298,207,415,80
-293,207,422,78
-300,198,426,76
-305,206,414,75
-307,199,412,82
-300,194,422,84
-298,194,427,81
-293,203,427,77
-280,210,429,81
-267,213,435,85
-272,209,436,83
-275,206,434,85
-275,207,437,81
-276,202,445,77
-274,197,453,76
-268,210,457,65
-273,215,450,62
-288,213,432,67
-288,201,438,73
-283,201,437,79
-292,195,434,79
-294,202,428,76
-297,192,430,81
-289,201,440,70
-290,203,444,63
-288,207,444,61
-289,203,443,65
-286,206,441,67
-283,202,453,62
-296,199,436,69
-294,201,438,67
-295,196,433,76
-288,200,434,78
-288,202,436,74
-285,199,437,79
-279,203,454,64
-285,201,439,75
-286,206,445,63
-292,205,435,68
-284,217,438,61
-290,219,443,48
-292,219,435,54
-298,224,420,58
-298,225,411,66
-303,222,408,67
-296,227,413,64
-290,229,415,66
-286,225,411,78
-272,234,413,81
-265,235,423,77
-270,232,430,68
-265,237,432,66
-277,226,425,72
-289,224,422,65
-287,215,426,72
-288,204,427,81
-297,201,429,73
-307,204,426,63
-319,204,415,62
-326,198,414,62
-334,198,406,62
-336,196,401,67
-333,203,402,62
-337,197,407,59
-340,194,403,63
-345,190,394,71
-345,190,398,67
-350,195,397,58
-358,195,387,60
-353,199,386,62
-344,200,388,68
-330,213,388,69
-333,215,391,61
-322,222,393,63
-329,221,383,67
-326,214,394,66
-323,220,395,62
-314,219,403,64
-312,213,411,64
-302,219,421,58
-318,214,406,62
-324,206,410,60
-328,204,406,62
-330,201,407,62
-328,202,402,68
-319,208,405,68
-321,203,408,68
-314,208,400,78
-321,209,403,67
-318,214,402,66
-315,215,399,71
-302,223,411,64
-299,221,414,66
-294,221,415,70
-298,220,410,72
-294,227,416,63
-289,224,417,70
-282,232,413,73
-291,227,415,67
-293,225,406,76
-288,231,403,78
-294,226,404,76
-290,220,415,75
-284,219,416,81
-272,234,421,73
-273,216,419,92
-276,215,417,92
-276,215,412,97
-275,213,414,98
-269,217,422,92
-267,213,442,78
-270,205,446,79
-267,206,439,88
-276,208,436,80
-270,213,436,81
-268,211,445,76
-261,228,439,72
-263,231,435,71
-256,236,434,74
-250,233,440,77
-254,228,439,79
-248,229,440,83
-257,218,438,87
-263,221,441,75
-253,223,440,84
-246,229,452,73
-255,231,440,74
-261,225,440,74
-265,228,432,75
-264,222,435,79
-254,225,445,76
-255,225,449,71
-264,227,448,61
-259,223,443,75
-259,210,445,86
-251,206,444,99
-256,206,449,89
-266,207,448,79
-267,197,451,85
-285,195,445,75
-289,194,447,70
-288,198,440,74
-273,203,445,79
-275,200,460,65
-282,190,462,66
-285,195,457,63
-286,202,459,53
-286,198,458,58
-294,190,454,62
-303,188,451,58
-306,184,449,61
-301,196,443,60
-288,201,430,81
-292,203,425,80
-284,214,425,77
-286,216,430,68
-293,211,427,69
-295,209,425,71
-301,215,424,60
-304,212,431,53
-303,197,435,65
-307,198,423,72
-292,211,435,62
-298,210,434,58
-303,197,428,72
-308,197,429,66
-311,198,431,60
-324,201,424,51
-342,189,408,61
-338,189,408,65
-341,188,409,62
-342,193,400,65
-338,204,396,62
-343,196,393,68
-339,197,394,70
-333,206,396,65
-327,196,405,72
-332,195,409,64
-337,201,401,61
-337,202,402,59
-350,199,394,57
-351,197,391,61
-340,208,391,61
-329,207,407,57
-342,197,401,60
-340,196,397,67
-331,203,398,68
-330,199,398,73
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diff --git a/target/classes/output.png b/target/classes/output.png
new file mode 100644
index 0000000000000000000000000000000000000000..26f0e188e8b42f7e5058e9e7730231d057497782
Binary files /dev/null and b/target/classes/output.png differ
diff --git a/target/classes/parameters.yaml b/target/classes/parameters.yaml
index d1bb7409f96ecc1192fee3aaa793e69404728d04..3ddf6aed6d973b2ca91423d04dcbd18c69932fb9 100644
--- a/target/classes/parameters.yaml
+++ b/target/classes/parameters.yaml
@@ -1,12 +1,12 @@
-seed : 120
-population : 1000 #number of agents
-size : 500 #size of the world in pixels
-nbOfPatientZero : 1
-infectionRate : 0.3 #chance that an infected agent will spread to a susceptible agent
-incubationRate : 0.1 #chance that an exposed agent become infected each cycle
-recoveryRate : 0.3 #chance that an infected agent become recovered each cycle
-looseImmunityRate : 0.05 #chance that a recovered agent become suceptible again
-nbOfCycles : 10000 #if the number is negative, will run endlessly
-timeBetweenCycles : 0 #in milliseconds, 0 or lower will run cycles as fast as possible
-synchronousMode : false #if true, will wake synchronously the agents in a pseudo-random order based on the given seed otherwise will wake up the agents asynchronously
-graphicalMode : false #if false, will run without graphical interface
\ No newline at end of file
+graphicalMode: true
+incubationRate: 0.3
+infectionRate: 0.035
+looseImmunityRate: 0.09
+recoveryRate: 0.6
+nbOfCycles: 2000
+nbOfPatientZero: 10
+population: 5000
+seed: 120
+size: 500
+synchronousMode: false
+timeBetweenCycles: 0
diff --git a/target/classes/pythonOutput/.getkeep b/target/classes/pythonOutput/.getkeep
new file mode 100644
index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391
diff --git a/target/classes/pythonOutput/output0.csv b/target/classes/pythonOutput/output0.csv
new file mode 100644
index 0000000000000000000000000000000000000000..623478b2345876bbc061382403eb752748505b6d
--- /dev/null
+++ b/target/classes/pythonOutput/output0.csv
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