From df6bc06f1fc1e1eb202301e84095b0f097e494da Mon Sep 17 00:00:00 2001
From: AxelCarayon <axel.carayon@gmail.com>
Date: Mon, 21 Feb 2022 16:57:42 +0100
Subject: [PATCH] =?UTF-8?q?Utilise=20le=20Dockerfile=20si=20pr=C3=A9sent?=
=?UTF-8?q?=20pour=20reproduire=20une=20exp=C3=A9rimentation?=
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---
loadExperiment.py | 40 +++++++++++++++++++++++++++++++++++-----
1 file changed, 35 insertions(+), 5 deletions(-)
diff --git a/loadExperiment.py b/loadExperiment.py
index a54d51d..fa03e69 100644
--- a/loadExperiment.py
+++ b/loadExperiment.py
@@ -17,6 +17,7 @@ instructionFile = None
inputFiles = []
outputFiles = []
+dockerfileIsPresent = False
beforeHash = None
def init(repository,branch) -> None :
@@ -39,7 +40,7 @@ def init(repository,branch) -> None :
os.chdir(folder)
def getParameters() -> None :
- global commandsFile, inputFiles, outputFiles, beforeHash, instructionFile
+ global commandsFile, inputFiles, outputFiles, beforeHash, instructionFile, dockerfileIsPresent
if not (os.path.exists('experimentResume.yaml')):
raise Exception("No exeperimentResume.yaml file found, the branch is not an exeperiment")
with open('experimentResume.yaml', 'r') as stream:
@@ -49,6 +50,7 @@ def getParameters() -> None :
inputFiles = parameters.get('inputs')
beforeHash = parameters.get('checksums')
instructionFile = parameters.get('instructions')
+ dockerfileIsPresent = parameters.get('dockerfile')
def runExperiment() -> None :
@@ -94,16 +96,44 @@ def compareChecksums() -> bool:
return changes
+def buildDockerImage() -> None:
+ print("Building the docker image ...")
+ try :
+ subprocess.run(f"docker build -t experimentreproduction ./",shell=True).check_returncode()
+ except :
+ subprocess.run(f"sudo docker build -t experimentreproduction ./",shell=True).check_returncode()
+
+def getWorkir() -> str :
+ workdir = "/"
+ with open("Dockerfile","r") as file:
+ for line in file.read().splitlines():
+ if line.startswith("WORKDIR"):
+ workdir = line.split(" ")[1]
+ return workdir
+
+def runDockerImage() -> None:
+ print("binding docker image to the current directory and running it...")
+ try:
+ subprocess.run(f"docker run -it --mount type=bind,source=\"$PWD\",target={getWorkir()} experimentreproduction",shell=True).check_returncode()
+ except :
+ subprocess.run(f"sudo docker run -it --mount type=bind,source=\"$PWD\",target={getWorkir()} experimentreproduction",shell=True).check_returncode()
+
+
def run(repository, branch) -> None :
print("Initializing the experiment repository ...")
init(repository, branch)
print("Getting the experiment parameters ...")
getParameters()
print("Running the experiment ...")
- if (commandsFile != None) :
- runExperiment()
- else :
- checkForInstructions()
+ if (dockerfileIsPresent) :
+ print("Dockerimage was found ! Using it to run the experiment...")
+ buildDockerImage()
+ runDockerImage()
+ else:
+ if (commandsFile != None) :
+ runExperiment()
+ else :
+ checkForInstructions()
print("Comparing checksums of the outputs ...")
if (compareChecksums()) :
print("The exepriment was reproduced with succes but some output files are differents.")
--
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