ADD: new minimal mains for amoeba

AMOEBAonAMAK/src/experiments/MinimalMainCommandLineMode.java

+package experiments;
+
+import fr.irit.smac.amak.Configuration;
+import kernel.AMOEBA;
+import kernel.StudiedSystem;
+
+/**
+ * The most minimal main possible producing a functioning amoeba.
+ * @author Hugo
+ *
+ */
+public class MinimalMainCommandLineMode {
+
+	public static void main(String[] args) throws InterruptedException {
+		
+		Configuration.commandLineMode = true;
+		
+		// create a system to be studied
+		StudiedSystem studiedSystem = new F_XY_System(50.0);
+		// create the amoeba
+		// Make sure the path to the config file is correct.
+		AMOEBA amoeba = new AMOEBA(null,null,"resources/twoDimensionsLauncher.xml", studiedSystem);
+		// a window should have appeared, allowing you to control and visualize the amoeba.
+		
+		// Learning and Request example
+		long start = System.currentTimeMillis();
+		for (int i = 0; i < 1001; ++i) {
+			studiedSystem.playOneStep();
+			amoeba.learn(studiedSystem.getOutput());
+		}
+		long end = System.currentTimeMillis();
+		System.out.println("Done in : " + (end - start)  + " ms");
+		
+		for (int i = 0; i < 10; ++i) {
+			studiedSystem.playOneStep();
+			System.out.println(amoeba.request(studiedSystem.getOutput()));
+		}
+	}
+
+}

AMOEBAonAMAK/src/experiments/MinimalMain.java → AMOEBAonAMAK/src/experiments/MinimalMainUI.java

 package experiments;
 
+import fr.irit.smac.amak.Configuration;
 import kernel.AMOEBA;
 import kernel.StudiedSystem;
 
@@ -8,15 +9,32 @@ import kernel.StudiedSystem;
  * @author Hugo
  *
  */
-public class MinimalMain {
+public class MinimalMainUI {//TODO
 
 	public static void main(String[] args) throws InterruptedException {
+		
+		Configuration.commandLineMode = false;
+		
 		// create a system to be studied
 		StudiedSystem studiedSystem = new F_XY_System(50.0);
 		// create the amoeba
 		// Make sure the path to the config file is correct.
-		AMOEBA amoeba = new AMOEBA("resources/twoDimensionsLauncher.xml", studiedSystem);
+		AMOEBA amoeba = new AMOEBA(null,null,"resources/twoDimensionsLauncher.xml", studiedSystem);
 		// a window should have appeared, allowing you to control and visualize the amoeba.
+		
+		// Learning and Request example
+		long start = System.currentTimeMillis();
+		for (int i = 0; i < 1001; ++i) {
+			studiedSystem.playOneStep();
+			amoeba.learn(studiedSystem.getOutput());
+		}
+		long end = System.currentTimeMillis();
+		System.out.println("Done in : " + (end - start)  + " ms");
+		
+		for (int i = 0; i < 10; ++i) {
+			studiedSystem.playOneStep();
+			System.out.println(amoeba.request(studiedSystem.getOutput()));
+		}
 	}
 
 }