new export of requirements

requirements.txt

@@ -2,139 +2,485 @@ about-time==4.2.1
 absl-py==2.1.0
 accelerate==0.26.1
 aiohttp==3.9.1
+aioprometheus==23.12.0
 aiosignal==1.3.1
+alabaster==0.7.13
 alive-progress==3.1.5
 ansicon==1.89.0
 anyio==4.2.0
+apache-beam==2.54.0
+argon2-cffi==23.1.0
+argon2-cffi-bindings==21.2.0
+array-record==0.5.0
+arrow==1.3.0
+astroid==3.0.3
+asttokens==2.4.1
+astunparse==1.6.3
+async-lru==2.0.4
+atomicwrites==1.4.1
+attributedict==0.3.0
 attrs==23.2.0
+audioread==3.0.1
+autoawq==0.1.8
+autopep8==2.0.4
+awscli==1.31.9
+Babel==2.14.0
+bcrypt==4.1.1
+beautifulsoup4==4.12.3
+binaryornot==0.4.4
 bitsandbytes==0.40.2
+black==23.11.0
 bleach==6.1.0
 blessed==1.20.0
+blessings==1.7
 blis==0.7.11
+bokeh==3.3.2
+boost-py==0.0.2
+botocore==1.33.9
+cached-property @ file:///home/conda/feedstock_root/build_artifacts/cached_property_1615209429212/work
 cachetools==5.3.2
 catalogue==2.0.10
 certifi==2023.11.17
+cffi==1.16.0
+cftime==1.6.3
+chardet==5.2.0
 charset-normalizer==3.3.2
+chex==0.1.85
+# Editable Git install with no remote (chirp==0.1.0)
+-e /gpfs7kw/linkhome/idris/softmgr/softmgr01/MS/perch
 click==8.1.7
+click-plugins==1.1.1
+cligj==0.7.2
 cloudpathlib==0.16.0
+cloudpickle==2.2.1
+clu==0.0.9
+codecov==2.1.13
 colorama==0.4.6
+coloredlogs==15.0.1
+colour-runner==0.1.1
+comm==0.2.1
 commonmark==0.9.1
 confection==0.1.4
+conllu==4.5.3
+contextlib2==21.6.0
 contourpy==1.2.0
+cookiecutter==2.5.0
+coverage==7.4.0
+crcmod==1.7
+cryptography==41.0.7
 cycler==0.12.1
 cymem==2.0.8
 Cython==3.0.8
+dask==2023.12.0
+dask-jobqueue==0.8.2
 dataclasses-json==0.6.3
+DataProperty==1.0.1
 datasets==2.16.1
+db-dtypes==1.2.0
+debugpy==1.8.1
 decorator==5.1.1
+deepdiff==6.7.1
+defusedxml==0.7.1
+Deprecated==1.2.14
+diff-match-patch==20230430
 dill==0.3.7
+distlib==0.3.8
+distributed==2023.12.0
 distro==1.9.0
+dm-tree==0.1.8
+dnspython==2.6.1
+docopt==0.6.2
+docstring-parser==0.15
+docstring-to-markdown==0.13
+docutils==0.16
+einops==0.7.0
+entrypoints @ file:///home/conda/feedstock_root/build_artifacts/entrypoints_1643888246732/work
 et-xmlfile==1.1.0
+etils==1.7.0
+evaluate==0.4.1
+exceptiongroup @ file:///home/conda/feedstock_root/build_artifacts/exceptiongroup_1700579780973/work
+execnet==2.0.2
+executing==2.0.1
 faiss-cpu==1.7.4
+fastapi==0.109.0
+fastavro==1.9.4
+fasteners==0.19
+fastjsonschema==2.19.1
+fastkml==0.12
 filelock==3.13.1
+fiona==1.9.5
+flake8==6.1.0
+flash-attn==2.4.3.post1
+flatbuffers==23.5.26
+flax==0.7.5
 fonttools==4.47.2
+fqdn==1.5.1
 frozenlist==1.4.1
 fsspec==2023.10.0
+gast==0.5.4
+gcsfs==2024.2.0
+geopandas==0.14.1
 getdaft==0.1.20
+google-api-core==2.17.1
+google-apitools==0.5.31
 google-auth==2.27.0
+google-auth-httplib2==0.1.1
 google-auth-oauthlib==1.2.0
+google-cloud-aiplatform==1.42.1
+google-cloud-bigquery==3.17.2
+google-cloud-bigquery-storage==2.24.0
+google-cloud-bigtable==2.23.0
+google-cloud-core==2.4.1
+google-cloud-datastore==2.19.0
+google-cloud-dlp==3.15.2
+google-cloud-language==2.13.2
+google-cloud-pubsub==2.19.6
+google-cloud-pubsublite==1.9.0
+google-cloud-recommendations-ai==0.10.9
+google-cloud-resource-manager==1.12.2
+google-cloud-spanner==3.42.0
+google-cloud-storage==2.14.0
+google-cloud-videointelligence==2.13.2
+google-cloud-vision==3.7.1
+google-crc32c==1.5.0
+google-pasta==0.2.0
+google-resumable-media==2.7.0
+googleapis-common-protos==1.62.0
+googledrivedownloader==0.4
 gpustat==1.1.1
 grapheme==0.6.0
+grpc-google-iam-v1==0.13.0
+grpc-interceptor==0.15.4
 grpcio==1.60.0
+grpcio-status==1.62.0
+gudhi==3.8.0
 h11==0.14.0
 h5py==3.10.0
+hdfs==2.7.3
+hopcroftkarp==1.2.5
 html5lib==1.1
 httpcore==1.0.2
+httplib2==0.22.0
+httptools==0.6.1
 httpx==0.26.0
 huggingface-hub==0.20.3
+humanfriendly==10.0
 idna==3.6
 imagecodecs==2024.1.1
+imageio==2.34.0
+imagesize==1.4.1
+immutabledict==4.1.0
+importlib-metadata==7.0.1
+importlib-resources==6.1.1
+inflection==0.5.1
+iniconfig==2.0.0
+inspecta==0.1.3
+intervaltree==3.1.0
+ipykernel==6.29.2
+ipython==8.22.1
+ipython-genutils==0.2.0
+ipywidgets==8.1.2
+isodate==0.6.1
+isoduration==20.11.0
+isort==5.13.2
+jaraco.classes==3.3.0
+jax==0.4.24
+jaxlib==0.4.24
+jedi==0.19.1
+jeepney==0.8.0
+jellyfish==1.0.3
 Jinja2==3.1.3
 jinxed==1.2.1
+jmespath==1.0.1
 joblib==1.3.2
+Js2Py==0.74
+json5==0.9.17
+jsonlines==4.0.0
+jsonpickle==3.0.3
+jsonpointer==2.4
 jsonschema==4.6.2
+jsonschema-specifications==2023.12.1
+jupyter==1.0.0
+jupyter-console==6.6.3
+jupyter-contrib-core==0.4.0
+jupyter-events==0.9.0
+jupyter-lsp==2.2.2
+jupyter-nbextensions-configurator==0.6.1
+jupyter-tensorboard==0.2.0
+jupyter_client==8.6.0
+jupyter_core==5.7.1
+jupyter_server==2.12.5
+jupyter_server_terminals==0.5.2
+jupyterlab==4.1.2
+jupyterlab_pygments==0.3.0
+jupyterlab_server==2.25.3
+jupyterlab_widgets==3.0.10
 kaggle==1.6.3
-kaleido==0.1.0.post1
+kaleido==0.1.0
+keras==2.15.0
+keyring==24.3.0
 kiwisolver==1.4.5
 langcodes==3.3.0
+lazy_loader==0.3
 Levenshtein==0.24.0
+libclang==16.0.6
+librosa==0.10.1
+lief==0.13.2
 lightning-utilities==0.10.1
+linkify-it-py==2.0.3
+llvmlite==0.40.1
+lm_eval==0.4.0
+locket==1.0.0
 loguru==0.7.2
 loralib==0.1.2
 ludwig==0.9.3
 lxml==5.1.0
 Markdown==3.5.2
+markdown-it-py==3.0.0
 MarkupSafe==2.1.4
 marshmallow==3.20.2
 marshmallow-dataclass==8.5.4
 marshmallow-jsonschema==0.13.0
 matplotlib==3.8.2
+matplotlib-inline==0.1.6
+mbstrdecoder==1.1.3
+mccabe==0.7.0
+mdit-py-plugins==0.4.1
+mdurl==0.1.2
+mercurial==6.6.1
+mistune==3.0.2
+ml-dtypes==0.2.0
+ml_collections==0.1.1
+more-itertools==10.1.0
 mpmath==1.3.0
+msgpack==1.0.7
 multidict==6.0.4
 multiprocess==0.70.15
 murmurhash==1.0.10
 mypy-extensions==1.0.0
+nb-conda-kernels @ file:///home/conda/feedstock_root/build_artifacts/nb_conda_kernels_1667060616919/work
+nbclassic @ file:///home/conda/feedstock_root/build_artifacts/nbclassic_1683202081046/work
+nbclient==0.9.0
+nbconvert==7.16.1
+nbformat==5.9.2
+nest-asyncio==1.6.0
+netCDF4==1.6.5
 networkx==3.2.1
+ninja==1.11.1.1
 nltk==3.8.1
+notebook==7.1.0
+notebook_shim==0.2.4
+numba==0.57.1
+numexpr==2.8.8
 numpy==1.26.3
+numpydoc==1.6.0
+nvidia-cublas-cu12==12.1.3.1
+nvidia-cuda-cupti-cu12==12.1.105
+nvidia-cuda-nvrtc-cu12==12.1.105
+nvidia-cuda-runtime-cu12==12.1.105
+nvidia-cudnn-cu12==8.9.2.26
+nvidia-cufft-cu12==11.0.2.54
+nvidia-curand-cu12==10.3.2.106
+nvidia-cusolver-cu12==11.4.5.107
+nvidia-cusparse-cu12==12.1.0.106
 nvidia-ml-py==12.535.133
+nvidia-nccl-cu12==2.18.1
+nvidia-nvjitlink-cu12==12.3.101
+nvidia-nvtx-cu12==12.1.105
+oauth2client==4.1.3
 oauthlib==3.2.2
+objsize==0.7.0
 openai==1.10.0
 openpyxl==3.1.2
+opt-einsum==3.3.0
+optax @ git+https://github.com/google-deepmind/optax.git@623609c7a77a19d48b021cbc300262308846317e
+orbax-checkpoint==0.4.4
+ordered-set==4.1.0
+orjson==3.9.12
+overrides==7.7.0
 packaging==23.2
 pandas==2.1.4
+pandas-gbq==0.21.0
+pandocfilters==1.5.1
+paramiko==3.3.1
+parso==0.8.3
+partd==1.4.1
+pathspec==0.11.2
+pathvalidate==3.2.0
 peft==0.7.1
+peppercorn==0.6
+persim==0.3.2
+pexpect==4.9.0
+pickleshare @ file:///home/conda/feedstock_root/build_artifacts/pickleshare_1602536217715/work
 pillow==10.2.0
+pkgutil_resolve_name @ file:///home/conda/feedstock_root/build_artifacts/pkgutil-resolve-name_1694617248815/work
+platformdirs==4.2.0
 plotly==5.18.0
+pluggy==1.4.0
+pooch==1.8.1
+portalocker==2.8.2
 preshed==3.0.9
+prometheus_client==0.20.0
+promise==2.3
+prompt-toolkit==3.0.43
+proto-plus==1.23.0
 protobuf==4.23.4
 psutil==5.9.4
+ptyprocess==0.7.0
+pure-eval==0.2.2
 py==1.11.0
 py-cpuinfo==9.0.0
 pyarrow==15.0.0
 pyarrow-hotfix==0.6
 pyasn1==0.5.1
 pyasn1-modules==0.3.0
+pybind11==2.11.1
+pycodestyle==2.11.1
+pycparser==2.21
 pydantic==1.10.14
+pydata-google-auth==1.8.2
+pydocstyle==6.3.0
+pydot==1.4.2
+pydub==0.25.1
+pyflakes==3.1.0
+pygeoif==0.7
 Pygments==2.17.2
+pyjsparser==2.7.1
+pylint==3.0.3
+pylint-venv==3.0.3
+pyls-spyder==0.4.0
+pymongo==4.6.2
+PyNaCl==1.5.0
 pyparsing==3.1.1
+pyproj==3.6.1
+pyproject-api==1.6.1
+PyQt5==5.15.10
+PyQt5-Qt5==5.15.2
+PyQt5-sip==12.13.0
+PyQtWebEngine==5.15.6
+PyQtWebEngine-Qt5==5.15.2
 pyrsistent==0.20.0
+pytablewriter==1.2.0
+pytest==8.0.1
+pytest-shard==0.1.2
+pytest-xdist==3.5.0
 python-dateutil==2.8.2
+python-dotenv==1.0.0
+python-json-logger==2.0.7
 python-Levenshtein==0.24.0
+python-lsp-black==1.3.0
+python-lsp-jsonrpc==1.1.2
+python-lsp-server==1.9.0
 python-slugify==8.0.2
+pytoolconfig==1.2.6
 pytz==2023.3.post1
+pyxdg==0.28
 pyxlsb==1.0.10
 PyYAML==6.0
+pyzmq==25.1.2
+QDarkStyle==3.2.3
+qstylizer==0.2.2
+QtAwesome==1.2.3
+qtconsole==5.5.1
+QtPy==2.4.1
+quantile-python==1.1
 rapidfuzz==3.6.1
+ratelimiter==1.2.0.post0
+ray==2.9.1
+rdflib==7.0.0
+referencing==0.33.0
 regex==2023.12.25
 requests==2.31.0
 requests-oauthlib==1.3.1
+responses==0.18.0
 retry==0.9.2
+rfc3339-validator==0.1.4
+rfc3986-validator==0.1.1
 rich==12.4.4
+ripser==0.6.4
+rootpath==0.1.1
+rope==1.11.0
+rouge-score==0.1.2
+rpds-py==0.18.0
 rsa==4.9
+Rtree==1.1.0
+s3transfer==0.8.2
+sacrebleu==2.4.0
 sacremoses==0.1.1
 safetensors==0.4.2
+scenic @ git+https://github.com/google-research/scenic.git@93e6c3ec8bf223d682c06f8a0eb091e1654228e5
+scikit-image==0.22.0
 scikit-learn==1.4.0
 scipy==1.12.0
+SecretStorage==3.3.3
+Send2Trash==1.8.2
 sentence-transformers==2.2.2
 sentencepiece==0.1.99
+shapely==2.0.3
+shtab==1.6.5
+SimpleITK==2.3.1
+sisl==0.14.3
 six==1.16.0
+slurmtop==0.0.2
 smart-open==6.4.0
 sniffio==1.3.0
+snowballstemmer==2.2.0
+sortedcontainers==2.4.0
+soundfile==0.12.1
+soupsieve==2.5
+soxr==0.3.7
 spacy==3.7.2
 spacy-legacy==3.0.12
 spacy-loggers==1.0.5
+SPARQLWrapper==2.0.0
+spatialite==0.0.3
+Sphinx==7.2.6
+sphinxcontrib-applehelp==1.0.7
+sphinxcontrib-devhelp==1.0.5
+sphinxcontrib-htmlhelp==2.0.4
+sphinxcontrib-jsmath==1.0.1
+sphinxcontrib-qthelp==1.0.6
+sphinxcontrib-serializinghtml==1.1.9
+spyder==5.5.0
+spyder-kernels==2.5.0
+sqlitedict==2.1.0
+sqlparse==0.4.4
 srsly==2.4.8
+stack-data==0.6.3
+starlette==0.35.1
 sympy==1.12
+tabledata==1.3.3
 tabulate==0.9.0
+tblib==3.0.0
+tcolorpy==0.1.4
 tenacity==8.2.3
 tensorboard==2.15.1
 tensorboard-data-server==0.7.2
+tensorflow==2.15.0
+tensorflow-addons==0.23.0
+tensorflow-datasets==4.9.4
+tensorflow-estimator==2.15.0
+tensorflow-hub==0.14.0
+tensorflow-io==0.36.0
+tensorflow-io-gcs-filesystem==0.36.0
+tensorflow-metadata==1.13.1
+tensorstore==0.1.45
+termcolor==2.4.0
+terminado==0.18.0
 text-unidecode==1.3
+textdistance==4.6.0
+texttable==1.7.0
+textual==0.59.0
 thinc==8.2.2
 threadpoolctl==3.2.0
+three-merge==0.1.1
 tifffile==2023.12.9
+tinycss2==1.2.1
 tokenizers==0.15.1
+toml==0.10.2
+tomli==2.0.1
+tomlkit==0.12.3
+toolz==0.12.1
 torch==2.1.2
 torchaudio==2.1.2
 torchdata==0.7.1
@@ -142,21 +488,58 @@ torchinfo==1.8.0
 torchmetrics==1.3.0.post0
 torchtext==0.16.2
 torchvision==0.16.2
+tornado==6.4
+tox==4.12.1
 tqdm==4.66.1
+tqdm-multiprocess==0.0.11
+traitlets==5.14.1
 transformers==4.37.1
+triton==2.1.0
+trl==0.7.10
+typeguard==2.13.3
+typepy==1.3.2
 typer==0.9.0
+types-python-dateutil==2.8.19.20240106
 typing-inspect==0.9.0
+typing-utils @ file:///home/conda/feedstock_root/build_artifacts/typing_utils_1622899189314/work
 typing_extensions==4.9.0
+tyro==0.7.0
 tzdata==2023.4
+tzlocal==5.2
+uc-micro-py==1.0.3
+ujson==5.8.0
+uri-template==1.3.0
 urllib3==1.26.18
+uvicorn==0.27.0
+uvloop==0.19.0
+virtualenv==20.25.0
+vllm==0.2.7
 wasabi==1.1.2
+watchdog==3.0.0
+watchfiles==0.21.0
 wcwidth==0.2.13
 weasel==0.3.4
+webcolors==1.13
 webencodings==0.5.1
+websocket-client==1.7.0
+websockets==12.0
 Werkzeug==3.0.1
+whatthepatch==1.0.5
+widgetsnbextension==4.0.10
 win32-setctime==1.1.0
+wrapt==1.14.1
+wurlitzer==3.0.3
+xarray==2024.3.0
+xeus-python==0.15.11
+xeus-python-shell==0.5.0
+xformers==0.0.23.post1
 xlrd==2.0.1
 XlsxWriter==3.1.9
 xlwt==1.3.0
 xxhash==3.4.1
+xyzservices==2023.10.1
+yapf==0.40.2
 yarl==1.9.4
+zict==3.0.0
+zipp==3.17.0
+zstandard==0.22.0